Last updated on 2026-02-03 02:50:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.44 | 819.21 | 857.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.86 | 544.19 | 568.05 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 70.00 | 1412.01 | 1482.01 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1364.59 | 1431.59 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 578.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.83 | 752.54 | 806.37 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 35.82 | 732.80 | 768.62 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 124.00 | 132.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 682.00 | 707.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 681.00 | 735.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [116s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-03 11:04:54.106521: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.106808: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.110274: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.116641: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.128023: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.128157: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.130448: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.136582: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.144096: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.144283: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.149345: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.164346: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.164792: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.17212: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.172285: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.177027: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.191713: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.192085: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.214593: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.21472: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.218959: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.253347: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.26351: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.263738: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.272553: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.35045: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.351546: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.399186: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.399334: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.401749: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.407864: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.415721: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.415918: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.421193: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.436426: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.437023: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.469183: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.469325: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.471657: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.477869: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.490216: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.490441: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.495184: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.510183: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.510591: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.530381: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.530519: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.533013: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.539363: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.556082: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.556304: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.560923: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.575778: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.576267: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.595672: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.595806: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.598165: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.604361: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.616292: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.61651: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.621025: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.636074: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.636542: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.666561: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.666762: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.66907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.675199: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.687467: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.687653: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.692316: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.707087: embedding
> test_pipeop_isomap.R: 2026-02-03 11:04:54.707535: DONE
> test_pipeop_isomap.R: 2026-02-03 11:04:54.729486: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.729639: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.732: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.738151: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.757653: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.757797: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.760101: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.766145: Classical Scaling
> test_pipeop_isomap.R: 2026-02-03 11:04:54.77285: Isomap START
> test_pipeop_isomap.R: 2026-02-03 11:04:54.773002: constructing knn graph
> test_pipeop_isomap.R: 2026-02-03 11:04:54.775352: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-03 11:04:54.781389: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [325s/407s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-02 20:04:18.587059: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:18.587605: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:18.616477: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:18.66503: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:18.768057: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:18.768352: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:18.789579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:18.824345: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:18.875391: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:18.875837: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:18.921242: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:19.024882: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:19.02608: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:19.075241: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:19.075726: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:19.10787: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:19.211811: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:19.21293: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:19.382152: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:19.382462: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:19.422501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:19.659272: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:19.733885: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:19.734324: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:19.837363: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:20.37101: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:20.387655: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:20.690446: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:20.690735: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:20.712712: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:20.760748: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:20.816019: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:20.816432: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:20.842457: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:20.963822: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:20.964965: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:21.266759: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:21.26704: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:21.291171: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:21.340962: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:21.440871: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:21.441288: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:21.484036: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:21.618807: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:21.619892: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:21.820848: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:21.821144: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:21.851699: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:21.910807: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:22.237698: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:22.238155: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:22.279613: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:22.411109: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:22.435676: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:22.592857: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:22.593167: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:22.600439: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:22.651399: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:22.751015: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:22.751454: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:22.782058: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:22.896574: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:22.897843: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:23.067525: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:23.068056: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:23.094376: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:23.135061: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:23.248159: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 20:04:23.24866: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:23.286776: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:23.388795: embedding
> test_pipeop_isomap.R: 2026-02-02 20:04:23.389931: DONE
> test_pipeop_isomap.R: 2026-02-02 20:04:23.578344: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:23.578637: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:23.603068: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:23.635999: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:23.80216: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:23.802461: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:23.830109: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:23.883574: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 20:04:23.942525: Isomap START
> test_pipeop_isomap.R: 2026-02-02 20:04:23.94284: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 20:04:23.949626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 20:04:24.006244: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [299s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-31 11:05:59.927679: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:05:59.928639: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:05:59.945081: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:05:59.96866: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.041448: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.042097: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.054471: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.076267: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.114972: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.115814: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.136665: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.175513: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.176903: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:00.216514: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.21718: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.23872: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.27595: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.277256: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:00.374994: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.375626: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.413207: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.523538: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.578286: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.579194: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.618239: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.859368: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.864566: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.071723: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.072379: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.084049: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.106402: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.172316: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.173278: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.194226: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.246443: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.248152: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.448344: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.448998: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.460259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.483983: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.560318: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.561025: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.57432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.611849: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.612952: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.725915: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.72659: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.837437: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.855074: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.916309: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.916966: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.930296: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.977689: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.979267: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.089708: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.090159: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.098939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.115924: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.195116: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.19603: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.218864: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.270282: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:02.272176: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.392307: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.392953: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.405096: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.427863: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.508346: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.509311: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.532501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.581692: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:02.58366: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.747842: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.748561: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.761433: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.784541: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.887359: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.887854: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.897602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.920921: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.960313: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.960974: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.973297: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.996631: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64