# Tidy Presentation of Clinical Reporting

## Documentation for package ‘reportRmd’ version 0.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addspace | Add spaces to strings in LaTeX
boxcoxfitRx | fit box cox transformed linear model
cap | Capitalize a string
clear_labels | Clear variable labels from a data frame
covsum | Get covariate summary dataframe
crrRx | fit crr model
ctDNA | Tumour size change over time Longitudinal changes in tumour size since baseline for patients by changes in ctDNA status (clearance, decrease or increase) since baseline.
excelCol | Retrieve columns number from spreadsheet columns specified as unquoted letters
excelColLetters | Retrieve spreadsheet column letter-names from columns indices
extract_labels | Extract variable labels from labelled data frame
forestplot2 | Create a forest plot using ggplot2
forestplotMV | Create a multivariable forest plot using ggplot2
forestplotUV | Create an univariable forest plot using ggplot2
forestplotUVMV | Combine an univariable and multivariable forest plot using ggplot2
formatp | Specific p-value formatting
geoR_boxcoxfit | Parameter Estimation for the Box-Cox Transformation
ggkmcif | Plot KM and CIF curves with ggplot
ggkmcif2 | Plot KM and CIF curves with ggplot
ggkmcif_paste | Plot KM and CIF curves with ggplot
hbld | Bold strings in HTML
lbld | Bold strings in LaTeX
lpvalue | Formats p-values for LaTeX
mvsum | Get multivariate summary dataframe
nestTable | Combine two table columns into a single column with levels of one nested within levels of the other.
nicename | Lean strings for printing
niceNum | Round retaining digits
outTable | Print tables to PDF/Latex HTML or Word
pembrolizumab | Survival data Survival status and ctDNA levels for patients receiving pembrolizumab
plotuv | Plot multiple bivariate relationships in a single plot
psthr | Round and paste with parentheses
pstprn | Paste with parentheses
pvalue | Formats p-values
replace_plot_labels | Replace variable names with labels in ggplot
rmds | Replace dollar signs with html for proper HTML output
rm_cifsum | Summarize cumulative incidence by group
rm_compactsum | Output a compact summary table
rm_covsum | Outputs a descriptive covariate table
rm_mvsum | Format a regression model nicely for 'Rmarkdown'
rm_survdiff | Display event counts, expected event counts and logrank test of differences
rm_survsum | Summarise survival data by group
rm_survtime | Display survival rates and events for specified times
rm_uvsum | Output several univariate models nicely in a single table
rm_uv_mv | Combine univariate and multivariable regression tables
sanitizestr | Sanitizes strings to not break LaTeX
scrolling_table | Output a scrollable table
set_labels | Set variable labels
set_var_labels | Set variable labels
uvmodels | Aligning models and parameters
uvsum | Get univariate summary dataframe