Bayesian Stability Analysis of Genotype by Environment Interaction (GEI)

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Documentation for package ‘baystability’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

as.data.frame.bys_result	Methods for baystability results
as.data.table.bys_result	Methods for baystability results
as.mcmc.list.bys_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
as_draws.bys_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
as_draws_df.bys_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
bayes_ammi	Bayesian estimation of linear-bilinear models: AMMI and SREG (GGE)
bayes_ammi.default	Bayesian estimation of linear-bilinear models: AMMI and SREG (GGE)
bayes_ammi_biplot	AMMI and GGE biplots with highest posterior density regions
bayes_ammi_biplot.default	AMMI and GGE biplots with highest posterior density regions
bayes_gge	Bayesian GGE (sites regression) model
bayes_gge.default	Bayesian GGE (sites regression) model
bayes_gge_biplot	AMMI and GGE biplots with highest posterior density regions
bayes_gge_biplot.default	AMMI and GGE biplots with highest posterior density regions
bys-draws	The draws of a fit for posterior, bayesplot and coda
bys-methods	Methods for baystability results
bys_app	Bayesian AMMI and SREG analysis in a web browser
bys_app_object	Bayesian AMMI and SREG analysis in a web browser
bys_cite	References of a result or of the package
bys_cite.default	References of a result or of the package
bys_compare	Compare Bayesian AMMI and GGE models
bys_compare.default	Compare Bayesian AMMI and GGE models
bys_contrasts	Orthonormal contrast matrix
bys_contrasts.default	Orthonormal contrast matrix
bys_interpret	Interpretation of a Bayesian AMMI analysis
bys_interpret.default	Interpretation of a Bayesian AMMI analysis
bys_ls_ammi	Least-squares AMMI model
bys_ls_ammi.default	Least-squares AMMI model
bys_ls_env_effects	Environment effects
bys_ls_env_effects.default	Environment effects
bys_ls_gen_effects	Genotype effects
bys_ls_gen_effects.default	Genotype effects
bys_ls_ge_effects	Genotype-by-environment interaction effects
bys_ls_ge_effects.default	Genotype-by-environment interaction effects
bys_ls_means	Genotype-by-environment means
bys_ls_means.default	Genotype-by-environment means
bys_ls_model	Linear mixed model of a multi-environment trial
bys_ls_model.default	Linear mixed model of a multi-environment trial
bys_ls_var	Genotype-by-environment variances
bys_ls_var.default	Genotype-by-environment variances
bys_notation	Notation of baystability
bys_orthonormal	Gram-Schmidt orthonormalisation
bys_orthonormal.default	Gram-Schmidt orthonormalisation
bys_priors	Prior distributions of the Bayesian AMMI model
bys_reference	Published values used by the tests and vignettes
bys_save	Save a figure (vector PDF by default)
bys_save.default	Save a figure (vector PDF by default)
bys_theme	ggplot2 theme of baystability
cultivo2008	Maize trials of 2008 and 2009
cultivo2009	Maize trials of 2008 and 2009
format.bys_interpretation	Interpretation of a Bayesian AMMI analysis
format.bys_result	Methods for baystability results
plot.bys_result	Methods for baystability results
print.bys_interpretation	Interpretation of a Bayesian AMMI analysis
print.bys_priors	Prior distributions of the Bayesian AMMI model
print.bys_result	Methods for baystability results
print.summary.bys_result	Methods for baystability results
summary.bys_result	Methods for baystability results