# High-Throughput Phenotyping with EHR using a Common Automated Pipeline

## Documentation for package ‘PheCAP’ version 1.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

PheCAP-package | High-Throughput Phenotyping with EHR using a Common Automated Pipeline
ehr_data | A Synthetic EHR Dataset
PheCAP | High-Throughput Phenotyping with EHR using a Common Automated Pipeline
PhecapData | Define or Read Datasets for Phenotyping
PhecapSurrogate | Define a Surrogate Variable used in Surrogate-Assisted Feature Extraction (SAFE)
phecap_generate_dictionary_file | Generate a Dictionary File for Note Parsing
phecap_perform_majority_voting | Perform Majority Voting on the CUIs from Multiple Knowledge Sources
phecap_plot_roc_curves | Plot ROC and Related Curves for Phenotyping Models
phecap_predict_phenotype | Predict Phenotype
phecap_run_feature_extraction | Run Surrogate-Assisted Feature Extraction (SAFE)
phecap_train_phenotyping_model | Train Phenotyping Model using the Training Labels
phecap_validate_phenotyping_model | Validate the Phenotyping Model using the Validation Labels