# Differential Pattern Analysis via Linear Modeling

## Documentation for package ‘DiPALM’ version 1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

DiPALM-package | DiPALM - Differential Pattern Analysis via Linear Modeling
AdjustPvalue | Determine p-values based on permutation test results
BlankPlot | Generate a blank plot window
BuildLimmaLM | Fit linear models to time-course expression patterns using the limma package
BuildModMembership | Calculate module membership (kME) for all genes in a time-course data set
DiPALM | DiPALM - Differential Pattern Analysis via Linear Modeling
exampleData | Example Data: Data for use with the DiPALM vignette
ggPlotMultiDensities | Plot multiple density distributions
PlotTCs | Plot multiple time-course expression patterns for one gene
PlotTCsRibbon | Plot multiple averaged time-course expression patterns for a group of genes
testData | Test Data: Data for function testing