| networkscaleup-package | The 'networkscaleup' package. |
| construct_pearson | Compute Pearson Residuals for ARD matrix and fitted model |
| construct_rqr | Compute Randomized Quantile Residuals for ARD Models |
| correlatedStan | Fit ARD using the uncorrelated or correlated model in Stan This function fits the ARD using either the uncorrelated or correlated model in Laga et al. (2021) in Stan. The population size estimates and degrees are scaled using a post-hoc procedure. |
| cov_plots | Covariance plots |
| dispersion_metric | Dispersion Metric for Fitted ARD Model |
| example_data | Simulated ARD data set with z and x. |
| fit_mle | Fit basic Poisson and Negative Binomial models using glmmTMB |
| get_surrogate | Compute Surrogate Residuals for ARD Models |
| hang_rootogram_ard | Hanging Rootogram for Fitted ARD Model |
| killworth | Fit Killworth models to ARD. This function estimates the degrees and population sizes using the plug-in MLE and MLE estimator. |
| log_mix_uniform | log computed uniform quantile |
| make_ard | Generate simulated ARD |
| make_ard_tidy | Construct tibble from ARD matrix |
| networkscaleup | The 'networkscaleup' package. |
| overdispersed | Fit Overdispersed model to ARD (Gibbs-Metropolis) |
| overdispersedStan | Fit ARD using the Overdispersed model in Stan |
| plot_fitted | Plot residuals against fitted values |
| residual_correlation | Construction Residual (row/column) correlation matrix |
| residual_heatmap | Construct heatmap of residuals |
| rqr_nbinom_logs | compute numerically stable negative binomial rqr |
| rqr_pois_logs | compute numerically stable Poisson rqr |
| scaling | Scale raw log degree and log prevalence estimates |
| tw_group_corr_test | Tracy-Widom test for residual group correlation |