Package: segtest
Title: Tests for Segregation Distortion in Polyploids
Version: 2.0.0
Authors@R: 
    c(person(given = "David", 
             family = "Gerard",
             email = "gerard.1787@gmail.com", 
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0001-9450-5023")),
      person(given = "Mira", 
             family = "Thakkar", 
             email = "chrtmira@gmail.com", 
             role = c("aut")),
      person(given = "Guilherme da Silva",
             family = "Pereira",
             email = "g.pereira@ufv.br",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-7106-8630")),
      person(given = "NSF DBI 2132247",
             role = "fnd",
             comment = "https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247")
     )
Description: Provides tests for segregation distortion in F1 
    polyploid populations under different assumptions of meiosis. 
    These tests can account for double reduction, partial preferential pairing,
    and genotype uncertainty through the use of genotype likelihoods. 
    Parallelization support is provided. Details of these methods are 
    described in Gerard et al. (2025a) <doi:10.1007/s00122-025-04816-z>
    and Gerard et al. (2025b) <doi:10.1101/2025.06.23.661114>.
    Part of this material is based upon work supported by the
    National Science Foundation under Grant No. 2132247.  The
    opinions, findings, and conclusions or recommendations expressed
    are those of the author and do not necessarily reflect the views
    of the National Science Foundation.
License: GPL (>= 3)
BugReports: https://github.com/dcgerard/segtest/issues
URL: https://dcgerard.github.io/segtest/
Encoding: UTF-8
RoxygenNote: 7.3.2
Biarch: true
Depends: R (>= 3.5)
Imports: doFuture, doRNG, foreach, future, iterators, minqa, nloptr,
        Rcpp, updog
Suggests: knitr, polymapR, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
LazyData: true
NeedsCompilation: yes
Packaged: 2025-06-30 13:45:58 UTC; dgerard
Author: David Gerard [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9450-5023>),
  Mira Thakkar [aut],
  Guilherme da Silva Pereira [ctb] (ORCID:
    <https://orcid.org/0000-0002-7106-8630>),
  NSF DBI 2132247 [fnd]
    (https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247)
Maintainer: David Gerard <gerard.1787@gmail.com>
Repository: CRAN
Date/Publication: 2025-06-30 18:40:02 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2026-01-31 05:24:15 UTC; windows
Archs: x64
