# Generated by roxygen2: do not edit by hand

S3method("[",epiworld_agents)
S3method("[",epiworld_entities)
S3method(add_param,epiworld_model)
S3method(add_tool,epiworld_model)
S3method(add_virus,epiworld_model)
S3method(add_virus,epiworld_seir)
S3method(add_virus,epiworld_seirconn)
S3method(add_virus,epiworld_seird)
S3method(add_virus,epiworld_seirdconn)
S3method(add_virus,epiworld_sir)
S3method(add_virus,epiworld_sirconn)
S3method(add_virus,epiworld_sird)
S3method(add_virus,epiworld_sirdconn)
S3method(agents_from_edgelist,epiworld_model)
S3method(agents_smallworld,epiworld_model)
S3method(as.array,epiworld_hist_transition)
S3method(get_agents,epiworld_model)
S3method(get_hist_tool,epiworld_model)
S3method(get_hist_total,epiworld_model)
S3method(get_hist_transition_matrix,epiworld_model)
S3method(get_hist_virus,epiworld_model)
S3method(get_n_replicates,epiworld_model)
S3method(get_n_tools,epiworld_model)
S3method(get_n_viruses,epiworld_model)
S3method(get_name,epiworld_model)
S3method(get_ndays,epiworld_model)
S3method(get_param,epiworld_model)
S3method(get_reproductive_number,epiworld_model)
S3method(get_states,epiworld_model)
S3method(get_today_total,epiworld_model)
S3method(get_transition_probability,epiworld_model)
S3method(get_transmissions,epiworld_diffnet)
S3method(get_transmissions,epiworld_model)
S3method(plot,epiworld_diagram)
S3method(plot,epiworld_generation_time)
S3method(plot,epiworld_hist)
S3method(plot,epiworld_hist_transition)
S3method(plot,epiworld_model)
S3method(plot,epiworld_multiple_save)
S3method(plot,epiworld_multiple_save_i)
S3method(plot,epiworld_multiple_save_reproductive_number)
S3method(plot,epiworld_repnum)
S3method(plot_epi,epiworld_hist)
S3method(plot_epi,epiworld_hist_virus)
S3method(plot_epi,epiworld_model)
S3method(print,epiworld_agent)
S3method(print,epiworld_agents)
S3method(print,epiworld_agents_tools)
S3method(print,epiworld_diagram)
S3method(print,epiworld_entities)
S3method(print,epiworld_entity)
S3method(print,epiworld_globalevent)
S3method(print,epiworld_lfmcmc)
S3method(print,epiworld_model)
S3method(print,epiworld_saver)
S3method(print,epiworld_tool)
S3method(print,epiworld_tool_fun)
S3method(print,epiworld_virus)
S3method(print,epiworld_virus_fun)
S3method(queuing_off,epiworld_model)
S3method(queuing_off,epiworld_seirconn)
S3method(queuing_off,epiworld_sirconn)
S3method(queuing_on,epiworld_model)
S3method(queuing_on,epiworld_seirconn)
S3method(queuing_on,epiworld_sirconn)
S3method(run,epiworld_model)
S3method(run_multiple,epiworld_model)
S3method(set_name,epiworld_model)
S3method(set_param,epiworld_model)
S3method(size,epiworld_model)
S3method(summary,epiworld_model)
S3method(today,epiworld_model)
S3method(verbose_off,epiworld_lfmcmc)
S3method(verbose_off,epiworld_model)
S3method(verbose_on,epiworld_lfmcmc)
S3method(verbose_on,epiworld_model)
export(LFMCMC)
export(ModelDiffNet)
export(ModelSEIR)
export(ModelSEIRCONN)
export(ModelSEIRD)
export(ModelSEIRDCONN)
export(ModelSEIRMixing)
export(ModelSEIRMixingQuarantine)
export(ModelSIR)
export(ModelSIRCONN)
export(ModelSIRD)
export(ModelSIRDCONN)
export(ModelSIRLogit)
export(ModelSIRMixing)
export(ModelSIS)
export(ModelSISD)
export(ModelSURV)
export(add_entities_from_dataframe)
export(add_entity)
export(add_globalevent)
export(add_param)
export(add_tool)
export(add_tool_agent)
export(add_tool_n)
export(add_virus)
export(add_virus_agent)
export(add_virus_n)
export(agents_from_edgelist)
export(agents_smallworld)
export(change_state)
export(clone_model)
export(distribute_entity_randomly)
export(distribute_entity_to_set)
export(distribute_tool_randomly)
export(distribute_tool_to_entities)
export(distribute_tool_to_set)
export(distribute_virus_randomly)
export(distribute_virus_set)
export(distribute_virus_to_entities)
export(distribute_virus_to_set)
export(draw_mermaid)
export(draw_mermaid_from_data)
export(draw_mermaid_from_file)
export(draw_mermaid_from_files)
export(draw_mermaid_from_matrix)
export(entity)
export(entity_add_agent)
export(entity_get_agents)
export(get_active_cases)
export(get_agents)
export(get_agents_data_ncols)
export(get_agents_states)
export(get_agents_tools)
export(get_all_accepted_kernel_scores)
export(get_all_accepted_params)
export(get_all_accepted_stats)
export(get_all_sample_acceptance)
export(get_all_sample_drawn_prob)
export(get_all_sample_kernel_scores)
export(get_all_sample_params)
export(get_all_sample_stats)
export(get_current_accepted_params)
export(get_current_accepted_stats)
export(get_current_proposed_params)
export(get_current_proposed_stats)
export(get_entities)
export(get_entity_name)
export(get_entity_size)
export(get_generation_time)
export(get_hist_tool)
export(get_hist_total)
export(get_hist_transition_matrix)
export(get_hist_virus)
export(get_hospitalizations)
export(get_initial_params)
export(get_mean_params)
export(get_mean_stats)
export(get_n_params)
export(get_n_replicates)
export(get_n_samples)
export(get_n_stats)
export(get_n_tools)
export(get_n_viruses)
export(get_name)
export(get_name_tool)
export(get_name_virus)
export(get_ndays)
export(get_network)
export(get_observed_stats)
export(get_outbreak_size)
export(get_param)
export(get_reproductive_number)
export(get_state)
export(get_states)
export(get_today_total)
export(get_tool)
export(get_transition_probability)
export(get_transmissions)
export(get_virus)
export(globalaction_fun)
export(globalaction_set_params)
export(globalaction_tool)
export(globalaction_tool_logit)
export(globalevent_fun)
export(globalevent_set_params)
export(globalevent_tool)
export(globalevent_tool_logit)
export(has_tool)
export(has_virus)
export(initial_states)
export(load_agents_entities_ties)
export(make_saver)
export(plot_generation_time)
export(plot_incidence)
export(plot_reproductive_number)
export(queuing_off)
export(queuing_on)
export(rm_entity)
export(rm_globalevent)
export(rm_tool)
export(rm_virus)
export(run)
export(run_lfmcmc)
export(run_multiple)
export(run_multiple_get_results)
export(set_agents_data)
export(set_death_reduction)
export(set_death_reduction_fun)
export(set_death_reduction_ptr)
export(set_distribution_entity)
export(set_distribution_tool)
export(set_distribution_virus)
export(set_incubation)
export(set_incubation_fun)
export(set_incubation_ptr)
export(set_kernel_fun)
export(set_name)
export(set_name_tool)
export(set_name_virus)
export(set_observed_data)
export(set_param)
export(set_params_names)
export(set_prob_death)
export(set_prob_death_fun)
export(set_prob_death_ptr)
export(set_prob_infecting)
export(set_prob_infecting_fun)
export(set_prob_infecting_ptr)
export(set_prob_recovery)
export(set_prob_recovery_fun)
export(set_prob_recovery_ptr)
export(set_proposal_fun)
export(set_recovery_enhancer)
export(set_recovery_enhancer_fun)
export(set_recovery_enhancer_ptr)
export(set_simulation_fun)
export(set_stats_names)
export(set_summary_fun)
export(set_susceptibility_reduction)
export(set_susceptibility_reduction_fun)
export(set_susceptibility_reduction_ptr)
export(set_transmission_reduction)
export(set_transmission_reduction_fun)
export(set_transmission_reduction_ptr)
export(size)
export(today)
export(tool)
export(tool_fun_logit)
export(use_kernel_fun_gaussian)
export(use_proposal_norm_reflective)
export(verbose_off)
export(verbose_on)
export(virus)
export(virus_fun_logit)
export(virus_set_state)
importFrom(graphics,boxplot)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(methods,formalArgs)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(stats,aggregate)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(utils,capture.output)
importFrom(utils,read.table)
useDynLib(epiworldR, .registration = TRUE)
