Package: crosshap
Type: Package
Title: Local Haplotype Clustering and Visualization
Version: 1.4.0
Authors@R: 
  c(person(given = "Jacob", 
           family = "Marsh", 
           role = c("aut", "cre"), 
           email = "jake.marsh@live.com.au",
           comment = c(ORCID = "0000-0003-3734-2023")),
    person(given = "Brady",
           family = "Johnston",
           role = "aut",
           email = "brady.johnston@me.com",
           comment = c(ORCID = "0000-0001-6301-2269")),
    person(given = "Jakob",
           family = "Petereit",
           role = "aut",
           email = "petinho86@gmail.com",
           comment = c(ORCID = "0000-0003-2159-0380"))
           )
Maintainer: Jacob Marsh <jake.marsh@live.com.au>
Description: A local haplotyping visualization toolbox to capture major patterns 
    of co-inheritance between clusters of linked variants, whilst connecting findings 
    to phenotypic and demographic traits across individuals. 'crosshap' enables users 
    to explore and understand genomic variation across a trait-associated region. 
    For an example of successful local haplotype analysis, see Marsh et al. (2022) 
    <doi:10.1007/s00122-022-04045-8>.
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.2.3
Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2,
        ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales,
        tibble, tidyr
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), umap, vdiffr
Depends: R (>= 4.00)
URL: https://jacobimarsh.github.io/crosshap/
BugReports: https://github.com/jacobimarsh/crosshap/issues
License: MIT + file LICENSE
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2024-03-31 15:17:05 UTC; jmarsh96
Author: Jacob Marsh [aut, cre] (<https://orcid.org/0000-0003-3734-2023>),
  Brady Johnston [aut] (<https://orcid.org/0000-0001-6301-2269>),
  Jakob Petereit [aut] (<https://orcid.org/0000-0003-2159-0380>)
Repository: CRAN
Date/Publication: 2024-03-31 15:40:02 UTC
Built: R 4.4.3; ; 2026-01-31 07:01:59 UTC; windows
