Package: SCORPIUS
Type: Package
Title: Inferring Developmental Chronologies from Single-Cell RNA
        Sequencing Data
Version: 1.0.10
Description: An accurate and easy tool for performing linear trajectory inference on
  single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS'
  provides functions for discovering the most important genes with respect to
  the reconstructed trajectory, as well as nice visualisation tools.
  Cannoodt et al. (2016) <doi:10.1101/079509>.
Authors@R: c(
    person(
      "Robrecht", "Cannoodt", 
      email = "rcannood@gmail.com", 
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0003-3641-729X")
    ),
    person(
      "Wouter", "Saelens", 
      email = "wouter.saelens@ugent.be", 
      role = c("ctb"), 
      comment = c(ORCID = "0000-0002-7114-6248")
    )
  )
License: GPL-3
Encoding: UTF-8
URL: https://github.com/rcannood/SCORPIUS,
        http://rcannood.github.io/SCORPIUS/
BugReports: https://github.com/rcannood/SCORPIUS/issues
LazyData: true
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Imports: dplyr, dynutils (>= 1.0.3), dynwrap, grDevices, ggplot2 (>=
        2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap,
        princurve (>= 2.1.4), purrr, ranger, RANN, RColorBrewer,
        reshape2, stats, tidyr, TSP
Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat,
        SingleCellExperiment, testthat (>= 2.1.0)
NeedsCompilation: no
Packaged: 2025-11-26 14:56:42 UTC; rcannood
Author: Robrecht Cannoodt [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3641-729X>),
  Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Repository: CRAN
Date/Publication: 2025-11-26 15:30:02 UTC
Built: R 4.4.3; ; 2026-01-31 06:53:13 UTC; windows
