LGPLv2+ and LGPLv2+ with exceptions and GPLv2+ and GPLv2+ with exceptions and BSD and Inner-Net-2.0 and ISC and Public Domain and GFDL-1.3-only
Bash is the GNU Project's shell. Bash is the Bourne Again SHell. Bash is an sh-compatible shell that incorporates useful features from the Korn shell (ksh) and C shell (csh). It is intended to conform to the IEEE POSIX P1003.2/ISO 9945.2 Shell and Tools standard. It offers functional improvements over sh for both programming and interactive use. In addition, most sh scripts can be run by Bash without modification.
acquired package info from repodata DB: repodata/69e709f4d2852d98f12867a74015d19384fe2727ff670fd70178cdde80b1e77e-primary.sqlite.bz2
Zlib is a free, general-purpose, not covered by any patents, lossless data-compression library for use on virtually any computer hardware and operating system. The zlib data format is itself portable across platforms.
A set of basic GNU tools commonly used in shell scripts
These are the GNU core utilities. This package is the combination of the old GNU fileutils, sh-utils, and textutils packages.
Ultrafast de novo assembly for long noisy reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel. These libraries provide critical APIs including ISO C11, POSIX.1-2008, BSD, OS-specific APIs and more. These APIs include such foundational facilities as open, read, write, malloc, printf, getaddrinfo, dlopen, pthread_create, crypt, login, exit and more.