CRAN Package Check Results for Maintainer ‘Chathurani Ranathunge <caranathunge86 at gmail.com>’

Last updated on 2026-04-16 03:52:52 CEST.

Package	ERROR	OK
promor	4	10

Package promor

Current CRAN status: ERROR: 4, OK: 10

Additional issues

M1mac

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(promor) > > test_check("promor") 0 empty row(s) removed. 2 empty column(s) removed. 1 protein(s) (rows) only identified by site removed. 4 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. 4 proteins with higher than 33% NAs in at least one group removed. 0 empty row(s) removed. 4 empty column(s) removed. 10 protein contaminant(s) (rows) removed. 0 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. change in estimate: 0.02415548 change in estimate: 0.02101209 change in estimate: 0.01821531 change in estimate: 0.0157772 change in estimate: 0.01367284 change in estimate: 0.01186459 change in estimate: 0.01031291 change in estimate: 0.008980791 Saving _problems/test-protein_analysis-424.R 1 siginificantly differentially expressed proteins found. Testing glm... Testing rf... Testing svmRadial... Done! [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-protein_analysis.R:419:3'): normalization works for cyclicloess ── Expected `normalize_data(df_mp, method = "cyclicloess")` to equal `df_norm_c`. Differences: actual vs expected [,1] [,2] [,3] - actual[1, ] 10.086035 20.13598 70.205445 + expected[1, ] 8.875947 21.90757 81.928810 - actual[2, ] 34.229368 34.59707 29.475138 + expected[2, ] 35.918001 38.54878 35.918001 - actual[3, ] 20.748909 34.27025 17.497403 + expected[3, ] 24.161291 24.16129 24.161291 - actual[4, ] 65.531947 57.33665 -6.608449 + expected[4, ] 43.541565 43.54156 43.541565 - actual[5, ] 18.860601 11.89760 20.730052 + expected[5, ] 17.339630 17.33963 17.339630 - actual[6, ] 42.446533 35.35054 45.603037 + expected[6, ] 44.825964 44.82596 44.825964 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [28s/73s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(promor) > > test_check("promor") 0 empty row(s) removed. 2 empty column(s) removed. 1 protein(s) (rows) only identified by site removed. 4 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. 4 proteins with higher than 33% NAs in at least one group removed. 0 empty row(s) removed. 4 empty column(s) removed. 10 protein contaminant(s) (rows) removed. 0 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. change in estimate: 0.02415548 change in estimate: 0.02101209 change in estimate: 0.01821531 change in estimate: 0.0157772 change in estimate: 0.01367284 change in estimate: 0.01186459 change in estimate: 0.01031291 change in estimate: 0.008980791 Saving _problems/test-protein_analysis-424.R 1 siginificantly differentially expressed proteins found. Testing glm... Testing rf... Testing svmRadial... Done! [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-protein_analysis.R:419:3'): normalization works for cyclicloess ── Expected `normalize_data(df_mp, method = "cyclicloess")` to equal `df_norm_c`. Differences: actual vs expected [,1] [,2] [,3] - actual[1, ] 10.086035 20.13598 70.205445 + expected[1, ] 8.875947 21.90757 81.928810 - actual[2, ] 34.229368 34.59707 29.475138 + expected[2, ] 35.918001 38.54878 35.918001 - actual[3, ] 20.748909 34.27025 17.497403 + expected[3, ] 24.161291 24.16129 24.161291 - actual[4, ] 65.531947 57.33665 -6.608449 + expected[4, ] 43.541565 43.54156 43.541565 - actual[5, ] 18.860601 11.89760 20.730052 + expected[5, ] 17.339630 17.33963 17.339630 - actual[6, ] 42.446533 35.35054 45.603037 + expected[6, ] 44.825964 44.82596 44.825964 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [27s/80s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(promor) > > test_check("promor") 0 empty row(s) removed. 2 empty column(s) removed. 1 protein(s) (rows) only identified by site removed. 4 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. 4 proteins with higher than 33% NAs in at least one group removed. 0 empty row(s) removed. 4 empty column(s) removed. 10 protein contaminant(s) (rows) removed. 0 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. change in estimate: 0.02415548 change in estimate: 0.02101209 change in estimate: 0.01821531 change in estimate: 0.0157772 change in estimate: 0.01367284 change in estimate: 0.01186459 change in estimate: 0.01031291 change in estimate: 0.008980791 Saving _problems/test-protein_analysis-424.R 1 siginificantly differentially expressed proteins found. Testing glm... Testing rf... Testing svmRadial... Done! [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-protein_analysis.R:419:3'): normalization works for cyclicloess ── Expected `normalize_data(df_mp, method = "cyclicloess")` to equal `df_norm_c`. Differences: actual vs expected [,1] [,2] [,3] - actual[1, ] 10.086035 20.13598 70.205445 + expected[1, ] 8.875947 21.90757 81.928810 - actual[2, ] 34.229368 34.59707 29.475138 + expected[2, ] 35.918001 38.54878 35.918001 - actual[3, ] 20.748909 34.27025 17.497403 + expected[3, ] 24.161291 24.16129 24.161291 - actual[4, ] 65.531947 57.33665 -6.608449 + expected[4, ] 43.541565 43.54156 43.541565 - actual[5, ] 18.860601 11.89760 20.730052 + expected[5, ] 17.339630 17.33963 17.339630 - actual[6, ] 42.446533 35.35054 45.603037 + expected[6, ] 44.825964 44.82596 44.825964 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [15s/18s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(promor) > > test_check("promor") 0 empty row(s) removed. 2 empty column(s) removed. 1 protein(s) (rows) only identified by site removed. 4 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. 4 proteins with higher than 33% NAs in at least one group removed. 0 empty row(s) removed. 4 empty column(s) removed. 10 protein contaminant(s) (rows) removed. 0 protein(s) identified by 2 or fewer unique peptides removed. Zeros have been replaced with NAs. Data have been log-transformed. change in estimate: 0.02415548 change in estimate: 0.02101209 change in estimate: 0.01821531 change in estimate: 0.0157772 change in estimate: 0.01367284 change in estimate: 0.01186459 change in estimate: 0.01031291 change in estimate: 0.008980791 Saving _problems/test-protein_analysis-424.R 1 siginificantly differentially expressed proteins found. Testing glm... Testing rf... Testing svmRadial... Done! [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-protein_analysis.R:419:3'): normalization works for cyclicloess ── Expected `normalize_data(df_mp, method = "cyclicloess")` to equal `df_norm_c`. Differences: actual vs expected [,1] [,2] [,3] - actual[1, ] 10.086035 20.13598 70.205445 + expected[1, ] 8.875947 21.90757 81.928810 - actual[2, ] 34.229368 34.59707 29.475138 + expected[2, ] 35.918001 38.54878 35.918001 - actual[3, ] 20.748909 34.27025 17.497403 + expected[3, ] 24.161291 24.16129 24.161291 - actual[4, ] 65.531947 57.33665 -6.608449 + expected[4, ] 43.541565 43.54156 43.541565 - actual[5, ] 18.860601 11.89760 20.730052 + expected[5, ] 17.339630 17.33963 17.339630 - actual[6, ] 42.446533 35.35054 45.603037 + expected[6, ] 44.825964 44.82596 44.825964 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 20 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64