Last updated on 2026-04-16 03:52:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 0.49.1-1 | 64.00 | 316.54 | 380.54 | WARN | |
| r-devel-linux-x86_64-fedora-gcc | 0.49.1-1 | 71.00 | 318.29 | 389.29 | WARN |
Version: 0.49.1-1
Check: dependencies in R code
Result: NOTE
Unexported objects imported by ':::' calls:
‘data.table:::as.data.frame.data.table’
‘stats:::na.exclude.data.frame’ ‘stats:::na.omit.data.frame’
See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.49.1-1
Check: foreign function calls
Result: NOTE
Registration problem:
symbol ‘.NAME’ not in namespace:
.Call(.NAME, ..., PACKAGE = PACKAGE)
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.49.1-1
Check: R code for possible problems
Result: NOTE
evalSeparately,FilterRules : <anonymous>: no visible global function
definition for ‘.’
Undefined global functions or variables:
.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.49.1-1
Check: Rd cross-references
Result: WARN
Undeclared packages ‘XVector’, ‘Biostrings’ in Rd xrefs
Missing link(s) in Rd file 'Vector-comparison.Rd':
‘[IRanges]{IntegerRanges-comparison}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.49.1-1
Check: for missing documentation entries
Result: WARN
Undocumented code objects:
‘I’ ‘head.LLint’ ‘pcompareRecursively’ ‘sort.List’ ‘t.HitsList’
‘tail.LLint’ ‘unname’ ‘window.LLint’
Undocumented S4 methods:
generic '!' and siglist 'List'
generic '<=' and siglist 'List,List'
generic '<=' and siglist 'List,list'
generic '<=' and siglist 'list,List'
generic '==' and siglist 'List,List'
generic '==' and siglist 'List,list'
generic '==' and siglist 'list,List'
generic '[' and siglist 'LLint'
generic '[<-' and siglist 'Rle'
generic 'anyNA' and siglist 'List'
generic 'by' and siglist 'Vector'
generic 'countMatches' and siglist 'ANY'
generic 'do.call' and siglist 'ANY,List'
generic 'duplicated' and siglist 'List'
generic 'eval' and siglist 'expression,Vector'
generic 'eval' and siglist 'language,Vector'
generic 'extractROWS' and siglist 'LLint,ANY'
generic 'extractROWS' and siglist 'LLint,NSBS'
generic 'extractROWS' and siglist 'LLint,RangeNSBS'
generic 'extractROWS' and siglist 'Vector,ANY'
generic 'filterRules' and siglist 'FilterResults'
generic 'from' and siglist 'HitsList'
generic 'getListElement' and siglist 'SimpleList'
generic 'grep' and siglist 'ANY,Rle'
generic 'grepl' and siglist 'ANY,Rle'
generic 'head' and siglist 'LLint'
generic 'is.na' and siglist 'List'
generic 'is.unsorted' and siglist 'List'
generic 'match' and siglist 'List,List'
generic 'match' and siglist 'List,Vector'
generic 'match' and siglist 'List,list'
generic 'match' and siglist 'List,vector'
generic 'match' and siglist 'list,List'
generic 'mergeROWS' and siglist 'ANY'
generic 'mergeROWS' and siglist 'Vector'
generic 'normalizeSingleBracketReplacementValue' and siglist
'DataFrame'
generic 'normalizeSingleBracketReplacementValue' and siglist 'List'
generic 'order' and siglist 'List'
generic 'pcompare' and siglist 'List,List'
generic 'pcompare' and siglist 'List,list'
generic 'pcompare' and siglist 'list,List'
generic 'pcompareRecursively' and siglist 'List'
generic 'pcompareRecursively' and siglist 'list'
generic 'rank' and siglist 'List'
generic 'rep.int' and siglist 'LLint'
generic 'replaceROWS' and siglist 'ANY'
generic 'replaceROWS' and siglist 'Rle'
generic 'replaceROWS' and siglist 'Vector'
generic 'sameAsPreviousROW' and siglist 'Rle'
generic 'sameAsPreviousROW' and siglist 'atomic'
generic 'sameAsPreviousROW' and siglist 'complex'
generic 'sameAsPreviousROW' and siglist 'integer'
generic 'sameAsPreviousROW' and siglist 'numeric'
generic 'sort' and siglist 'List'
generic 'splitAsList' and siglist 'ANY'
generic 'splitAsList' and siglist 'SortedByQueryHits'
generic 'summary' and siglist 'FilterResults'
generic 't' and siglist 'Pairs'
generic 'tail' and siglist 'LLint'
generic 'to' and siglist 'HitsList'
generic 'unique' and siglist 'List'
generic 'unique' and siglist 'SimpleList'
generic 'window' and siglist 'LLint'
generic 'with' and siglist 'Vector'
generic 'xtabs' and siglist 'Vector'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.49.1-1
Check: compiled code
Result: WARN
File ‘S4Vectors/libs/S4Vectors.so’:
Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’, ‘Rf_findVar’
File ‘S4Vectors/libs/S4Vectors.so’:
Found no call to: ‘R_useDynamicSymbols’
These entry points may be removed soon:
‘Rf_findVar’, ‘PRENV’, ‘R_PromiseExpr’
Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.49.1-1
Check: Rd cross-references
Result: WARN
Missing link(s) in Rd file 'Vector-comparison.Rd':
‘[IRanges]{IntegerRanges-comparison}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavor: r-devel-linux-x86_64-fedora-gcc