Package: noisyr
Type: Package
Title: Noise Quantification in High Throughput Sequencing Output
Version: 1.0.0
Authors@R: c(
            person("Ilias", "Moutsopoulos", , "im383@cam.ac.uk", c("aut", "cre")),
            person("Irina", "Mohorianu", , "iim22@cam.ac.uk", role = c("aut","ctb")),
            person("Hajk-Georg", "Drost", , "hajk-georg.drost@tuebingen.mpg.de", role="ctb"),
            person("Elze", "Lauzikaite", , "el523@cam.ac.uk", role = "ctb")
            )
Maintainer: Ilias Moutsopoulos <im383@cam.ac.uk>
Description: Quantifies and removes technical noise from high-throughput 
        sequencing data. Two approaches are used, one based on the count
        matrix, and one using the alignment BAM files directly.
        Contains several options for every step of the process, as well
        as tools to quality check and assess the stability of output.
Depends: R (>= 3.1.2)
Imports: utils, grDevices, tibble, dplyr, magrittr, ggplot2,
        preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy,
        doParallel, foreach
Suggests: testthat, roxygen2, knitr, rmarkdown
License: GPL-2
Encoding: UTF-8
URL: https://github.com/Core-Bioinformatics/noisyR
BugReports: https://github.com/Core-Bioinformatics/noisyR/issues
RoxygenNote: 7.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-04-16 08:59:10 UTC; Ilias Moutsopoulos
Author: Ilias Moutsopoulos [aut, cre],
  Irina Mohorianu [aut, ctb],
  Hajk-Georg Drost [ctb],
  Elze Lauzikaite [ctb]
Repository: CRAN
Date/Publication: 2021-04-16 10:20:02 UTC
Built: R 4.6.0; ; 2026-04-17 02:22:03 UTC; windows
