crmPack-package	crmPack
%>%	pipe
&,ArmCondition,ArmCondition-method	and-ArmCondition-ArmCondition-method
&,Opening,Opening-method	and-Opening-Opening-method
&,Stopping,Stopping-method	and-Stopping-Stopping-method
&,Stopping,StoppingAll-method	and-Stopping-StoppingAll-method
&,StoppingAll,Stopping-method	and-StoppingAll-Stopping-method
.ArmCondition	ArmCondition-class
.ArmConditionAll	ArmConditionAll-class
.ArmConditionAny	ArmConditionAny-class
.ArmConditionList	ArmConditionList-class
.ArmFinishedCondition	ArmFinishedCondition-class
.ArmMinDoseCondition	ArmMinDoseCondition-class
.Backfill	Backfill-class
.CohortSizeConst	CohortSizeConst-class
.CohortSizeDLT	CohortSizeDLT-class
.CohortSizeMax	CohortSizeMax-class
.CohortSizeMin	CohortSizeMin-class
.CohortSizeOrdinal	CohortSizeOrdinal-class
.CohortSizeParts	CohortSizeParts-class
.CohortSizeRandom	CohortSizeRandom-class
.CohortSizeRange	CohortSizeRange-class
.ComboSimulations	ComboSimulations-class
.ComboSimulationsSummary	ComboSimulationsSummary-class
.CrmPackClass	CrmPackClass
.DADesign	DADesign-class
.DALogisticLogNormal	DALogisticLogNormal-class
.DASimulations	DASimulations-class
.Data	Data-class
.DataCombo	DataCombo-class
.DataDA	DataDA-class
.DataDual	DataDual-class
.DataGrouped	DataGrouped-class
.DataMixture	DataMixture-class
.DataOrdinal	DataOrdinal-class
.DataParts	DataParts-class
.DefaultArmCondition	ArmCondition-class
.DefaultArmConditionAll	ArmConditionAll-class
.DefaultArmConditionAny	ArmConditionAny-class
.DefaultArmConditionList	ArmConditionList-class
.DefaultArmFinishedCondition	ArmFinishedCondition-class
.DefaultArmMinDoseCondition	ArmMinDoseCondition-class
.DefaultBackfill	Backfill-class
.DefaultCohortSize	CohortSize-class
.DefaultCohortSizeConst	CohortSizeConst-class
.DefaultCohortSizeDLT	CohortSizeDLT-class
.DefaultCohortSizeMax	CohortSizeMax-class
.DefaultCohortSizeMin	CohortSizeMin-class
.DefaultCohortSizeOrdinal	CohortSizeOrdinal-class
.DefaultCohortSizeParts	CohortSizeParts-class
.DefaultCohortSizeRandom	CohortSizeRandom-class
.DefaultCohortSizeRange	CohortSizeRange-class
.DefaultComboSimulations	ComboSimulations-class
.DefaultComboSimulationsSummary	ComboSimulationsSummary-class
.DefaultDADesign	DADesign-class
.DefaultDALogisticLogNormal	DALogisticLogNormal-class
.DefaultDASimulations	DASimulations-class
.DefaultData	Data-class
.DefaultDataCombo	DataCombo-class
.DefaultDataDA	DataDA-class
.DefaultDataDual	DataDual-class
.DefaultDataGeneral	GeneralData-class
.DefaultDataGrouped	DataGrouped-class
.DefaultDataMixture	DataMixture-class
.DefaultDataOrdinal	DataOrdinal-class
.DefaultDataParts	DataParts-class
.DefaultDesign	Design-class
.DefaultDesignArm	DesignArm-class
.DefaultDesignCombo	DesignCombo-class
.DefaultDesignGrouped	DesignGrouped-class
.DefaultDesignOrdinal	DesignOrdinal-class
.DefaultDualDesign	DualDesign-class
.DefaultDualEndpoint	DualEndpoint-class
.DefaultDualEndpointBeta	DualEndpointBeta-class
.DefaultDualEndpointEmax	DualEndpointEmax-class
.DefaultDualEndpointRW	DualEndpointRW-class
.DefaultDualResponsesDesign	DualResponsesDesign-class
.DefaultDualResponsesSamplesDesign	DualResponsesSamplesDesign-class
.DefaultDualSimulations	DualSimulations-class
.DefaultDualSimulationsSummary	DualSimulationsSummary-class
.DefaultEffFlexi	EffFlexi-class
.DefaultEffloglog	Effloglog-class
.DefaultFractionalCRM	FractionalCRM-class
.DefaultGeneralModel	GeneralModel-class
.DefaultGeneralSimulations	GeneralSimulations-class
.DefaultGeneralSimulationsSummary	GeneralSimulationsSummary-class
.DefaultHierarchicalData	HierarchicalData-class
.DefaultHierarchicalDesign	HierarchicalDesign-class
.DefaultHierarchicalModel	HierarchicalModel-class
.DefaultHierarchicalSamples	HierarchicalSamples-class
.DefaultHierarchicalSimulations	HierarchicalSimulations-class
.DefaultHierarchicalSimulationsSummary	HierarchicalSimulationsSummary-class
.DefaultIncrements	Increments-class
.DefaultIncrementsComboCartesian	IncrementsComboCartesian-class
.DefaultIncrementsComboOneDrugOnly	IncrementsComboOneDrugOnly-class
.DefaultIncrementsDoseLevels	IncrementsDoseLevels-class
.DefaultIncrementsHSRBeta	IncrementsHSRBeta-class
.DefaultIncrementsMaxToxProb	IncrementsMaxToxProb-class
.DefaultIncrementsMin	IncrementsMin-class
.DefaultIncrementsOrdinal	IncrementsOrdinal-class
.DefaultIncrementsRelative	IncrementsRelative-class
.DefaultIncrementsRelativeDLT	IncrementsRelativeDLT-class
.DefaultIncrementsRelativeDLTCurrent	IncrementsRelativeDLTCurrent-class
.DefaultIncrementsRelativeParts	IncrementsRelativeParts-class
.DefaultLogisticIndepBeta	LogisticIndepBeta-class
.DefaultLogisticKadane	LogisticKadane-class
.DefaultLogisticKadaneBetaGamma	LogisticKadaneBetaGamma-class
.DefaultLogisticLogNormal	LogisticLogNormal-class
.DefaultLogisticLogNormalGrouped	LogisticLogNormalGrouped-class
.DefaultLogisticLogNormalMixture	LogisticLogNormalMixture-class
.DefaultLogisticLogNormalOrdinal	LogisticLogNormalOrdinal-class
.DefaultLogisticLogNormalSub	LogisticLogNormalSub-class
.DefaultLogisticNormal	LogisticNormal-class
.DefaultLogisticNormalFixedMixture	LogisticNormalFixedMixture-class
.DefaultLogisticNormalMixture	LogisticNormalMixture-class
.DefaultMcmcOptions	McmcOptions-class
.DefaultModelEff	ModelEff-class
.DefaultModelLogNormal	ModelLogNormal-class
.DefaultModelParamsNormal	ModelParamsNormal-class
.DefaultModelPseudo	ModelPseudo-class
.DefaultModelTox	ModelTox-class
.DefaultNextBest	NextBest-class
.DefaultNextBestDualEndpoint	NextBestDualEndpoint-class
.DefaultNextBestEWOC	NextBestEWOC-class
.DefaultNextBestInfTheory	NextBestInfTheory-class
.DefaultNextBestMaxGain	NextBestMaxGain-class
.DefaultNextBestMaxGainSamples	NextBestMaxGainSamples-class
.DefaultNextBestMinDist	NextBestMinDist-class
.DefaultNextBestMTD	NextBestMTD-class
.DefaultNextBestNCRM	NextBestNCRM-class
.DefaultNextBestNCRMLoss	NextBestNCRMLoss-class
.DefaultNextBestOrdinal	NextBestOrdinal-class
.DefaultNextBestProbMTDLTE	NextBestProbMTDLTE-class
.DefaultNextBestProbMTDMinDist	NextBestProbMTDMinDist-class
.DefaultNextBestTD	NextBestTD-class
.DefaultNextBestTDsamples	NextBestTDsamples-class
.DefaultNextBestThreePlusThree	NextBestThreePlusThree-class
.DefaultNoArmCondition	NoArmCondition-class
.DefaultOneParExpPrior	OneParExpPrior-class
.DefaultOneParLogNormalPrior	OneParLogNormalPrior-class
.DefaultOpening	Opening-class
.DefaultOpeningAll	OpeningAll-class
.DefaultOpeningAny	OpeningAny-class
.DefaultOpeningList	OpeningList-class
.DefaultOpeningMinCohorts	OpeningMinCohorts-class
.DefaultOpeningMinDose	OpeningMinDose-class
.DefaultOpeningMinResponses	OpeningMinResponses-class
.DefaultOpeningNone	OpeningNone-class
.DefaultProbitLogNormal	ProbitLogNormal-class
.DefaultProbitLogNormalRel	ProbitLogNormalRel-class
.DefaultPseudoDualFlexiSimulations	PseudoDualFlexiSimulations-class
.DefaultPseudoDualSimulations	PseudoDualSimulations-class
.DefaultPseudoDualSimulationsSummary	PseudoDualSimulationsSummary-class
.DefaultPseudoSimulations	PseudoSimulations-class
.DefaultPseudoSimulationsSummary	PseudoSimulationsSummary-class
.DefaultRecruitment	Recruitment-class
.DefaultRecruitmentRatio	RecruitmentRatio-class
.DefaultRecruitmentUnlimited	RecruitmentUnlimited-class
.DefaultRuleDesign	RuleDesign-class
.DefaultRuleDesignOrdinal	RuleDesignOrdinal-class
.DefaultSafetyWindow	SafetyWindow-class
.DefaultSafetyWindowConst	SafetyWindowConst-class
.DefaultSafetyWindowSize	SafetyWindowSize-class
.DefaultSamples	Samples-class
.DefaultSimulations	Simulations-class
.DefaultSimulationsSummary	SimulationsSummary-class
.DefaultStartingDose	StartingDose-class
.DefaultStoppingAll	StoppingAll-class
.DefaultStoppingAny	StoppingAny-class
.DefaultStoppingCohortsNearDose	StoppingCohortsNearDose-class
.DefaultStoppingExternal	StoppingExternal-class
.DefaultStoppingHighestDose	StoppingHighestDose-class
.DefaultStoppingList	StoppingList-class
.DefaultStoppingLowestDoseHSRBeta	StoppingLowestDoseHSRBeta-class
.DefaultStoppingMaxGainCIRatio	StoppingMaxGainCIRatio-class
.DefaultStoppingMinCohorts	StoppingMinCohorts-class
.DefaultStoppingMinPatients	StoppingMinPatients-class
.DefaultStoppingMissingDose	StoppingMissingDose-class
.DefaultStoppingMTDCV	StoppingMTDCV-class
.DefaultStoppingMTDdistribution	StoppingMTDdistribution-class
.DefaultStoppingOrdinal	StoppingOrdinal-class
.DefaultStoppingPatientsNearDose	StoppingPatientsNearDose-class
.DefaultStoppingSpecificDose	StoppingSpecificDose-class
.DefaultStoppingTargetBiomarker	StoppingTargetBiomarker-class
.DefaultStoppingTargetProb	StoppingTargetProb-class
.DefaultStoppingTDCIRatio	StoppingTDCIRatio-class
.DefaultTDDesign	TDDesign-class
.DefaultTDsamplesDesign	TDsamplesDesign-class
.DefaultTITELogisticLogNormal	TITELogisticLogNormal-class
.DefaultTITELogisticLogNormalSub	TITELogisticLogNormalSub-class
.DefaultTwoDrugsCombo	TwoDrugsCombo-class
.Design	Design-class
.DesignArm	DesignArm-class
.DesignCombo	DesignCombo-class
.DesignGrouped	DesignGrouped-class
.DesignOrdinal	DesignOrdinal-class
.DualDesign	DualDesign-class
.DualEndpoint	DualEndpoint-class
.DualEndpointBeta	DualEndpointBeta-class
.DualEndpointEmax	DualEndpointEmax-class
.DualEndpointRW	DualEndpointRW-class
.DualResponsesDesign	DualResponsesDesign-class
.DualResponsesSamplesDesign	DualResponsesSamplesDesign-class
.DualSimulations	DualSimulations-class
.DualSimulationsSummary	DualSimulationsSummary-class
.EffFlexi	EffFlexi-class
.Effloglog	Effloglog-class
.FractionalCRM	FractionalCRM-class
.GeneralData	GeneralData-class
.GeneralModel	GeneralModel-class
.GeneralSimulations	GeneralSimulations-class
.GeneralSimulationsSummary	GeneralSimulationsSummary-class
.HierarchicalData	HierarchicalData-class
.HierarchicalDesign	HierarchicalDesign-class
.HierarchicalModel	HierarchicalModel-class
.HierarchicalSamples	HierarchicalSamples-class
.HierarchicalSimulations	HierarchicalSimulations-class
.HierarchicalSimulationsSummary	HierarchicalSimulationsSummary-class
.IncrementsComboCartesian	IncrementsComboCartesian-class
.IncrementsComboOneDrugOnly	IncrementsComboOneDrugOnly-class
.IncrementsDoseLevels	IncrementsDoseLevels-class
.IncrementsHSRBeta	IncrementsHSRBeta-class
.IncrementsMaxToxProb	IncrementsMaxToxProb-class
.IncrementsMin	IncrementsMin-class
.IncrementsOrdinal	IncrementsOrdinal-class
.IncrementsRelative	IncrementsRelative-class
.IncrementsRelativeDLT	IncrementsRelativeDLT-class
.IncrementsRelativeDLTCurrent	IncrementsRelativeDLTCurrent-class
.IncrementsRelativeParts	IncrementsRelativeParts-class
.LogisticIndepBeta	LogisticIndepBeta-class
.LogisticKadane	LogisticKadane-class
.LogisticKadaneBetaGamma	LogisticKadaneBetaGamma-class
.LogisticLogNormal	LogisticLogNormal-class
.LogisticLogNormalGrouped	LogisticLogNormalGrouped-class
.LogisticLogNormalMixture	LogisticLogNormalMixture-class
.LogisticLogNormalOrdinal	LogisticLogNormalOrdinal-class
.LogisticLogNormalSub	LogisticLogNormalSub-class
.LogisticNormal	LogisticNormal-class
.LogisticNormalFixedMixture	LogisticNormalFixedMixture-class
.LogisticNormalMixture	LogisticNormalMixture-class
.McmcOptions	McmcOptions-class
.ModelEff	ModelEff-class
.ModelLogNormal	ModelLogNormal-class
.ModelParamsNormal	ModelParamsNormal-class
.ModelPseudo	ModelPseudo-class
.ModelTox	ModelTox-class
.NextBestDualEndpoint	NextBestDualEndpoint-class
.NextBestEWOC	NextBestEWOC-class
.NextBestInfTheory	NextBestInfTheory-class
.NextBestMaxGain	NextBestMaxGain-class
.NextBestMaxGainSamples	NextBestMaxGainSamples-class
.NextBestMinDist	NextBestMinDist-class
.NextBestMTD	NextBestMTD-class
.NextBestNCRM	NextBestNCRM-class
.NextBestNCRMLoss	NextBestNCRMLoss-class
.NextBestOrdinal	NextBestOrdinal-class
.NextBestProbMTDLTE	NextBestProbMTDLTE-class
.NextBestProbMTDMinDist	NextBestProbMTDMinDist-class
.NextBestTD	NextBestTD-class
.NextBestTDsamples	NextBestTDsamples-class
.NextBestThreePlusThree	NextBestThreePlusThree-class
.NoArmCondition	NoArmCondition-class
.OneParExpPrior	OneParExpPrior-class
.OneParLogNormalPrior	OneParLogNormalPrior-class
.Opening	Opening-class
.OpeningAll	OpeningAll-class
.OpeningAny	OpeningAny-class
.OpeningList	OpeningList-class
.OpeningMinCohorts	OpeningMinCohorts-class
.OpeningMinDose	OpeningMinDose-class
.OpeningMinResponses	OpeningMinResponses-class
.OpeningNone	OpeningNone-class
.ProbitLogNormal	ProbitLogNormal-class
.ProbitLogNormalRel	ProbitLogNormalRel-class
.PseudoDualFlexiSimulations	PseudoDualFlexiSimulations-class
.PseudoDualSimulations	PseudoDualSimulations-class
.PseudoDualSimulationsSummary	PseudoDualSimulationsSummary-class
.PseudoSimulations	PseudoSimulations-class
.PseudoSimulationsSummary	PseudoSimulationsSummary-class
.Recruitment	Recruitment-class
.RecruitmentRatio	RecruitmentRatio-class
.RecruitmentUnlimited	RecruitmentUnlimited-class
.RuleDesign	RuleDesign-class
.RuleDesignOrdinal	RuleDesignOrdinal-class
.SafetyWindowConst	SafetyWindowConst-class
.SafetyWindowSize	SafetyWindowSize-class
.Samples	Samples-class
.Simulations	Simulations-class
.SimulationsSummary	SimulationsSummary-class
.StartingDose	StartingDose-class
.StoppingAll	StoppingAll-class
.StoppingAny	StoppingAny-class
.StoppingCohortsNearDose	StoppingCohortsNearDose-class
.StoppingExternal	StoppingExternal-class
.StoppingHighestDose	StoppingHighestDose-class
.StoppingList	StoppingList-class
.StoppingLowestDoseHSRBeta	StoppingLowestDoseHSRBeta-class
.StoppingMaxGainCIRatio	StoppingMaxGainCIRatio-class
.StoppingMinCohorts	StoppingMinCohorts-class
.StoppingMinPatients	StoppingMinPatients-class
.StoppingMissingDose	StoppingMissingDose-class
.StoppingMTDCV	StoppingMTDCV-class
.StoppingMTDdistribution	StoppingMTDdistribution-class
.StoppingOrdinal	StoppingOrdinal-class
.StoppingPatientsNearDose	StoppingPatientsNearDose-class
.StoppingSpecificDose	StoppingSpecificDose-class
.StoppingTargetBiomarker	StoppingTargetBiomarker-class
.StoppingTargetProb	StoppingTargetProb-class
.StoppingTDCIRatio	StoppingTDCIRatio-class
.TDDesign	TDDesign-class
.TDsamplesDesign	TDsamplesDesign-class
.TITELogisticLogNormal	TITELogisticLogNormal-class
.TITELogisticLogNormalSub	TITELogisticLogNormalSub-class
.TwoDrugsCombo	TwoDrugsCombo-class
and,ArmCondition,ArmCondition-method	and-ArmCondition-ArmCondition-method
and,Opening,Opening-method	and-Opening-Opening-method
and-Stopping-Stopping	and-Stopping-Stopping-method
and-Stopping-StoppingAll	and-Stopping-StoppingAll-method
and-StoppingAll-Stopping	and-StoppingAll-Stopping-method
approximate	approximate
approximate,Samples-method	approximate
ArmCondition	ArmCondition-class
ArmCondition-class	ArmCondition-class
ArmConditionAll	ArmConditionAll-class
ArmConditionAll-class	ArmConditionAll-class
ArmConditionAny	ArmConditionAny-class
ArmConditionAny-class	ArmConditionAny-class
ArmConditionList	ArmConditionList-class
ArmConditionList-class	ArmConditionList-class
ArmFinishedCondition	ArmFinishedCondition-class
ArmFinishedCondition-class	ArmFinishedCondition-class
ArmMinDoseCondition	ArmMinDoseCondition-class
ArmMinDoseCondition-class	ArmMinDoseCondition-class
armSamples	armSamples
armSamples,HierarchicalSamples,character-method	armSamples
assertions	assertions
assert_equal	check_equal
assert_format	check_format
assert_length	check_length
assert_probabilities	check_probabilities
assert_probability	check_probability
assert_probability_range	check_probability_range
assert_range	check_range
Backfill	Backfill-class
Backfill-class	Backfill-class
biomarker	biomarker
biomarker,integer,DualEndpoint,Samples-method	biomarker
biomarker-DualEndpoint	biomarker
check_equal	check_equal
check_format	check_format
check_length	check_length
check_probabilities	check_probabilities
check_probability	check_probability
check_probability_range	check_probability_range
check_range	check_range
CohortSize	CohortSize-class
CohortSize-class	CohortSize-class
CohortSizeConst	CohortSizeConst-class
CohortSizeConst-class	CohortSizeConst-class
CohortSizeDLT	CohortSizeDLT-class
CohortSizeDLT-class	CohortSizeDLT-class
CohortSizeMax	CohortSizeMax-class
CohortSizeMax-class	CohortSizeMax-class
CohortSizeMin	CohortSizeMin-class
CohortSizeMin-class	CohortSizeMin-class
CohortSizeOrdinal	CohortSizeOrdinal-class
CohortSizeOrdinal-class	CohortSizeOrdinal-class
CohortSizeParts	CohortSizeParts-class
CohortSizeParts-class	CohortSizeParts-class
CohortSizeRandom	CohortSizeRandom-class
CohortSizeRandom-class	CohortSizeRandom-class
CohortSizeRange	CohortSizeRange-class
CohortSizeRange-class	CohortSizeRange-class
ComboSimulations	ComboSimulations-class
ComboSimulations-class	ComboSimulations-class
ComboSimulationsSummary	ComboSimulationsSummary-class
ComboSimulationsSummary-class	ComboSimulationsSummary-class
crmPack	crmPack
CrmPackClass	CrmPackClass
CrmPackClass-class	CrmPackClass
crmPackExample	crmPackExample
crmPackHelp	crmPackHelp
DADesign	DADesign-class
DADesign-class	DADesign-class
DALogisticLogNormal	DALogisticLogNormal-class
DALogisticLogNormal-class	DALogisticLogNormal-class
dapply	dapply
DASimulations	DASimulations-class
DASimulations-class	DASimulations-class
Data	Data-class
Data-class	Data-class
DataCombo	DataCombo-class
DataCombo-class	DataCombo-class
DataDA	DataDA-class
DataDA-class	DataDA-class
DataDual	DataDual-class
DataDual-class	DataDual-class
DataGrouped	DataGrouped-class
DataGrouped-class	DataGrouped-class
DataMixture	DataMixture-class
DataMixture-class	DataMixture-class
DataOrdinal	DataOrdinal-class
DataOrdinal-class	DataOrdinal-class
DataParts	DataParts-class
DataParts-class	DataParts-class
Design	Design-class
Design-class	Design-class
DesignArm	DesignArm-class
DesignArm-class	DesignArm-class
DesignCombo	DesignCombo-class
DesignCombo-class	DesignCombo-class
DesignGrouped	DesignGrouped-class
DesignGrouped-class	DesignGrouped-class
DesignOrdinal	DesignOrdinal-class
DesignOrdinal-class	DesignOrdinal-class
dinvGamma	dinvGamma
disable_logging	enable_logging
DLTLikelihood	DLTLikelihood
dose	dose
dose,numeric,DualEndpoint,Samples-method	dose
dose,numeric,EffFlexi,Samples-method	dose
dose,numeric,Effloglog,missing-method	dose
dose,numeric,LogisticIndepBeta,missing-method	dose
dose,numeric,LogisticIndepBeta,Samples-method	dose
dose,numeric,LogisticKadane,Samples-method	dose
dose,numeric,LogisticKadaneBetaGamma,Samples-method	dose
dose,numeric,LogisticLogNormal,Samples-method	dose
dose,numeric,LogisticLogNormalGrouped,Samples-method	dose
dose,numeric,LogisticLogNormalMixture,Samples-method	dose
dose,numeric,LogisticLogNormalOrdinal,Samples-method	dose
dose,numeric,LogisticLogNormalSub,Samples-method	dose
dose,numeric,LogisticNormal,Samples-method	dose
dose,numeric,LogisticNormalFixedMixture,Samples-method	dose
dose,numeric,LogisticNormalMixture,Samples-method	dose
dose,numeric,OneParExpPrior,Samples-method	dose
dose,numeric,OneParLogNormalPrior,Samples-method	dose
dose,numeric,ProbitLogNormal,Samples-method	dose
dose,numeric,ProbitLogNormalRel,Samples-method	dose
dose-DualEndpoint	dose
dose-EffFlexi	dose
dose-Effloglog-noSamples	dose
dose-LogisticIndepBeta	dose
dose-LogisticIndepBeta-noSamples	dose
dose-LogisticKadane	dose
dose-LogisticKadaneBetaGamma	dose
dose-LogisticLogNormal	dose
dose-LogisticLogNormalGrouped	dose
dose-LogisticLogNormalMixture	dose
dose-LogisticLogNormalOrdinal	dose
dose-LogisticLogNormalSub	dose
dose-LogisticNormal	dose
dose-LogisticNormalFixedMixture	dose
dose-LogisticNormalMixture	dose
dose-OneParExpPrior	dose
dose-OneParLogNormalPrior	dose
dose-ProbitLogNormal	dose
dose-ProbitLogNormalRel	dose
doseFunction	doseFunction
doseFunction,GeneralModel-method	doseFunction
doseFunction,LogisticLogNormalOrdinal-method	doseFunction
doseFunction,ModelPseudo-method	doseFunction
doseFunction-GeneralModel	doseFunction
doseFunction-LogisticLogNormalOrdinal	doseFunction
doseFunction-ModelPseudo	doseFunction
dose_grid_range	dose_grid_range
dose_grid_range,Data-method	dose_grid_range
dose_grid_range,DataOrdinal-method	dose_grid_range
dose_grid_range-Data	dose_grid_range
DualDesign	DualDesign-class
DualDesign-class	DualDesign-class
DualEndpoint	DualEndpoint-class
DualEndpoint-class	DualEndpoint-class
DualEndpointBeta	DualEndpointBeta-class
DualEndpointBeta-class	DualEndpointBeta-class
DualEndpointEmax	DualEndpointEmax-class
DualEndpointEmax-class	DualEndpointEmax-class
DualEndpointRW	DualEndpointRW-class
DualEndpointRW-class	DualEndpointRW-class
DualResponsesDesign	DualResponsesDesign-class
DualResponsesDesign-class	DualResponsesDesign-class
DualResponsesSamplesDesign	DualResponsesSamplesDesign-class
DualResponsesSamplesDesign-class	DualResponsesSamplesDesign-class
DualSimulations	DualSimulations-class
DualSimulations-class	DualSimulations-class
DualSimulationsSummary	DualSimulationsSummary-class
DualSimulationsSummary-class	DualSimulationsSummary-class
EffFlexi	EffFlexi-class
EffFlexi-class	EffFlexi-class
efficacy	efficacy
efficacy,numeric,EffFlexi,Samples-method	efficacy
efficacy,numeric,Effloglog,missing-method	efficacy
efficacy,numeric,Effloglog,Samples-method	efficacy
efficacy-EffFlexi	efficacy
efficacy-Effloglog	efficacy
efficacy-Effloglog-noSamples	efficacy
efficacyFunction	efficacyFunction
efficacyFunction,ModelEff-method	efficacyFunction
efficacyFunction-ModelEff	efficacyFunction
Effloglog	Effloglog-class
Effloglog-class	Effloglog-class
enable_logging	enable_logging
examine	examine
examine,DADesign-method	examine
examine,Design-method	examine
examine,RuleDesign-method	examine
expect_format	check_format
expect_probabilities	check_probabilities
expect_probability	check_probability
expect_probability_range	check_probability_range
expect_range	check_range
fit	fit
fit,HierarchicalSamples,HierarchicalModel,HierarchicalData-method	fit
fit,Samples,DualEndpoint,DataDual-method	fit
fit,Samples,EffFlexi,DataDual-method	fit
fit,Samples,Effloglog,DataDual-method	fit
fit,Samples,GeneralModel,Data-method	fit
fit,Samples,LogisticIndepBeta,Data-method	fit
fit,Samples,LogisticLogNormalOrdinal,DataOrdinal-method	fit
fit,Samples,TwoDrugsCombo,DataCombo-method	fit
fitGain	fitGain
fitGain,ModelTox,Samples,ModelEff,Samples,DataDual-method	fitGain
fitPEM	fitPEM
fitPEM,Samples,DALogisticLogNormal,DataDA-method	fitPEM
FractionalCRM	FractionalCRM-class
FractionalCRM-class	FractionalCRM-class
gain	gain
gain,numeric,ModelTox,missing,Effloglog,missing-method	gain
gain,numeric,ModelTox,Samples,ModelEff,Samples-method	gain
gain-ModelTox-Effloglog-noSamples	gain
gain-ModelTox-ModelEff	gain
GeneralData	GeneralData-class
GeneralData-class	GeneralData-class
GeneralModel	GeneralModel-class
GeneralModel-class	GeneralModel-class
GeneralSimulations	GeneralSimulations-class
GeneralSimulations-class	GeneralSimulations-class
GeneralSimulationsSummary	GeneralSimulationsSummary-class
GeneralSimulationsSummary-class	GeneralSimulationsSummary-class
get,Samples,character-method	get-Samples-character-method
getEff	getEff
getEff,DataDual-method	getEff
getEff-DataDual	getEff
get_arm_simulations	get_arm_simulations
get_result_list	get_result_list
HierarchicalData	HierarchicalData-class
HierarchicalData-class	HierarchicalData-class
HierarchicalDesign	HierarchicalDesign-class
HierarchicalDesign-class	HierarchicalDesign-class
HierarchicalModel	HierarchicalModel-class
HierarchicalModel-class	HierarchicalModel-class
HierarchicalSamples	HierarchicalSamples-class
HierarchicalSamples-class	HierarchicalSamples-class
HierarchicalSimulations	HierarchicalSimulations-class
HierarchicalSimulations-class	HierarchicalSimulations-class
HierarchicalSimulationsSummary	HierarchicalSimulationsSummary-class
HierarchicalSimulationsSummary-class	HierarchicalSimulationsSummary-class
HistoricalArm	DesignArm-class
h_all_equivalent	h_all_equivalent
h_barplot_percentages	h_barplot_percentages
h_blind_plot_data	h_blind_plot_data
h_calc_report_label_percentage	h_calc_report_label_percentage
h_check_fun_formals	h_check_fun_formals
h_combo_doses_unique_per_cohort	v_data_objects
h_convert_ordinal_data	h_convert_ordinal_data
h_convert_ordinal_model	h_convert_ordinal_model
h_convert_ordinal_samples	h_convert_ordinal_samples
h_covr_active	h_covr_helpers
h_covr_detrace	h_covr_helpers
h_covr_detrace_call	h_covr_helpers
h_covr_helpers	h_covr_helpers
h_default_if_empty	h_default_if_empty
h_determine_dlts	h_determine_dlts
h_doses_unique_per_cohort	v_data_objects
h_dose_combo_below_limit	h_dose_combo_below_limit
h_enroll_backfill_patients	h_enroll_backfill_patients
h_eval_combo_truth	h_eval_combo_truth
h_find_interval	h_find_interval
h_format_number	h_format_number
h_get_formatted_dosegrid	h_get_formatted_dosegrid
h_get_min_inf_beta	h_get_min_inf_beta
h_get_quantiles_start_values	h_get_quantiles_start_values
h_group_data	h_group_data
h_hierarchical_bind_stop_report	h_hierarchical_bind_stop_report
h_hierarchical_compile_datamodel	h_hierarchical_compile_datamodel
h_hierarchical_compile_init	h_hierarchical_compile_init
h_hierarchical_compile_modelspecs	h_hierarchical_compile_modelspecs
h_hierarchical_compile_priormodel	h_hierarchical_compile_priormodel
h_hierarchical_expr_key	h_hierarchical_expr_key
h_hierarchical_filter_pooled_specs	h_hierarchical_filter_pooled_specs
h_hierarchical_get_arm_arg	h_hierarchical_get_arm_arg
h_hierarchical_get_decision_samples	h_hierarchical_get_decision_samples
h_hierarchical_is_single_model	h_hierarchical_is_single_model
h_hierarchical_make_pool_map	h_hierarchical_make_pool_map
h_hierarchical_model_body_lines	h_hierarchical_model_body_lines
h_hierarchical_model_specs	h_hierarchical_model_specs
h_hierarchical_model_type	h_hierarchical_model_type
h_hierarchical_namespace_model	h_hierarchical_namespace_model
h_hierarchical_parse_ref	h_hierarchical_parse_ref
h_hierarchical_pooled_nodes	h_hierarchical_pooled_nodes
h_hierarchical_pool_names	h_hierarchical_pool_names
h_hierarchical_prior_relations	h_hierarchical_prior_relations
h_hierarchical_reference_expr	h_hierarchical_reference_expr
h_hierarchical_reference_stochastic_node	h_hierarchical_reference_stochastic_node
h_hierarchical_remove_pooled_prior_lines	h_hierarchical_remove_pooled_prior_lines
h_hierarchical_root_symbols	h_hierarchical_root_symbols
h_hierarchical_safe_name	h_hierarchical_safe_name
h_hierarchical_stochastic_subexpressions	h_hierarchical_stochastic_subexpressions
h_hierarchical_supported_refs	h_hierarchical_supported_refs
h_historical_arm_design	h_historical_arm_design
h_info_theory_dist	h_info_theory_dist
h_in_range	h_in_range
h_is_covr_trace	h_covr_helpers
h_is_positive_definite	h_is_positive_definite
h_jags_add_dummy	h_jags_add_dummy
h_jags_extract_samples	h_jags_extract_samples
h_jags_get_data	h_jags_get_data
h_jags_get_model_inits	h_jags_get_model_inits
h_jags_join_models	h_jags_join_models
h_jags_write_model	h_jags_write_model
h_kable_param_default	h_kable_param_default
h_knit_format_func	h_knit_format_func
h_mcmc_get_hierarchical_arm_samples	h_mcmc_get_hierarchical_arm_samples
h_mcmc_get_hierarchical_data	h_mcmc_get_hierarchical_data
h_model_dual_endpoint_beta	h_model_dual_endpoint_beta
h_model_dual_endpoint_rho	h_model_dual_endpoint_rho
h_model_dual_endpoint_sigma2betaw	h_model_dual_endpoint_sigma2betaw
h_model_dual_endpoint_sigma2w	h_model_dual_endpoint_sigma2w
h_next_best_eligible_doses	h_next_best_eligible_doses
h_next_best_mgsamples_plot	h_next_best_mgsamples_plot
h_next_best_mg_ci	h_next_best_mg_ci
h_next_best_mg_doses_at_grid	h_next_best_mg_doses_at_grid
h_next_best_mg_plot	h_next_best_mg_plot
h_next_best_ncrm_loss_plot	h_next_best_ncrm_loss_plot
h_next_best_tdsamples_plot	h_next_best_tdsamples_plot
h_next_best_td_plot	h_next_best_td_plot
h_null_if_na	h_null_if_na
h_obtain_dose_grid_range	h_obtain_dose_grid_range
h_plot_combo_evolution	h_plot_combo_evolution
h_plot_data_cohort_lines	h_plot_data_cohort_lines
h_plot_data_dataordinal	plot-Data
h_plot_data_df	h_plot_data_df
h_plot_data_df,Data-method	h_plot_data_df
h_plot_data_df,DataOrdinal-method	h_plot_data_df
h_plot_doses_tried	h_plot_doses_tried
h_plot_simulation_trajectory	h_plot_simulation_trajectory
h_prepare_labels	h_prepare_labels
h_prepare_units	h_prepare_units
h_prob_two_drugs_combo	h_prob_two_drugs_combo
h_prob_two_drugs_combo_normalized_dose	h_prob_two_drugs_combo_normalized_dose
h_prob_two_drugs_combo_single_prob	h_prob_two_drugs_combo_single_prob
h_prob_two_drugs_combo_single_samples	h_prob_two_drugs_combo_single_samples
h_pseudo_sim_fit_summary	h_pseudo_sim_fit_summary
h_pseudo_sim_inverse_dose	h_pseudo_sim_inverse_dose
h_quantiles_target_function	h_quantiles_target_function
h_rapply	h_rapply
h_simulations_output_format	h_simulations_output_format
h_slots	h_slots
h_summarize_add_stats	h_summarize_add_stats
h_test_named_numeric	h_test_named_numeric
h_this_truth	h_this_truth
h_tite_logistic_datamodel	h_tite_logistic_datamodel
h_tite_logistic_modelspecs	h_tite_logistic_modelspecs
h_tite_logistic_weights	h_tite_logistic_weights
h_unpack_stopit	h_unpack_stopit
h_update_backfill_queue	h_update_backfill_queue
h_validate_combine_results	h_validate_combine_results
h_validate_common_data_slots	h_validate_common_data_slots
Increments	Increments-class
Increments-class	Increments-class
IncrementsComboCartesian	IncrementsComboCartesian-class
IncrementsComboCartesian-class	IncrementsComboCartesian-class
IncrementsComboOneDrugOnly	IncrementsComboOneDrugOnly-class
IncrementsComboOneDrugOnly-class	IncrementsComboOneDrugOnly-class
IncrementsDoseLevels	IncrementsDoseLevels-class
IncrementsDoseLevels-class	IncrementsDoseLevels-class
IncrementsHSRBeta	IncrementsHSRBeta-class
IncrementsHSRBeta-class	IncrementsHSRBeta-class
IncrementsMaxToxProb	IncrementsMaxToxProb-class
IncrementsMaxToxProb-class	IncrementsMaxToxProb-class
IncrementsMin	IncrementsMin-class
IncrementsMin-class	IncrementsMin-class
IncrementsOrdinal	IncrementsOrdinal-class
IncrementsOrdinal-class	IncrementsOrdinal-class
IncrementsRelative	IncrementsRelative-class
IncrementsRelative-class	IncrementsRelative-class
IncrementsRelativeDLT	IncrementsRelativeDLT-class
IncrementsRelativeDLT-class	IncrementsRelativeDLT-class
IncrementsRelativeDLTCurrent	IncrementsRelativeDLTCurrent-class
IncrementsRelativeDLTCurrent-class	IncrementsRelativeDLTCurrent-class
IncrementsRelativeParts	IncrementsRelativeParts-class
IncrementsRelativeParts-class	IncrementsRelativeParts-class
is_logging_enabled	enable_logging
knit_print	knit_print
knit_print.Backfill	knit_print
knit_print.CohortSizeConst	knit_print
knit_print.CohortSizeDLT	knit_print
knit_print.CohortSizeMax	knit_print
knit_print.CohortSizeMin	knit_print
knit_print.CohortSizeOrdinal	knit_print
knit_print.CohortSizeParts	knit_print
knit_print.CohortSizeRandom	knit_print
knit_print.CohortSizeRange	knit_print
knit_print.DADesign	knit_print
knit_print.DataCombo	knit_print
knit_print.DataParts	knit_print
knit_print.Design	knit_print
knit_print.DesignCombo	knit_print
knit_print.DesignGrouped	knit_print
knit_print.DesignOrdinal	knit_print
knit_print.DualDesign	knit_print
knit_print.DualEndpoint	knit_print
knit_print.DualResponsesDesign	knit_print
knit_print.DualResponsesSamplesDesign	knit_print
knit_print.Effloglog	knit_print
knit_print.GeneralData	knit_print
knit_print.GeneralModel	knit_print
knit_print.HierarchicalModel	knit_print
knit_print.IncrementsComboCartesian	knit_print
knit_print.IncrementsComboOneDrugOnly	knit_print
knit_print.IncrementsDoseLevels	knit_print
knit_print.IncrementsHSRBeta	knit_print
knit_print.IncrementsMin	knit_print
knit_print.IncrementsOrdinal	knit_print
knit_print.IncrementsRelative	knit_print
knit_print.IncrementsRelativeDLT	knit_print
knit_print.IncrementsRelativeDLTCurrent	knit_print
knit_print.IncrementsRelativeParts	knit_print
knit_print.LogisticIndepBeta	knit_print
knit_print.LogisticKadane	knit_print
knit_print.LogisticKadaneBetaGamma	knit_print
knit_print.LogisticLogNormal	knit_print
knit_print.LogisticLogNormalGrouped	knit_print
knit_print.LogisticLogNormalMixture	knit_print
knit_print.LogisticLogNormalOrdinal	knit_print
knit_print.LogisticLogNormalSub	knit_print
knit_print.LogisticNormalFixedMixture	knit_print
knit_print.LogisticNormalMixture	knit_print
knit_print.ModelParamsNormal	knit_print
knit_print.NextBestDualEndpoint	knit_print
knit_print.NextBestInfTheory	knit_print
knit_print.NextBestMaxGain	knit_print
knit_print.NextBestMaxGainSamples	knit_print
knit_print.NextBestMinDist	knit_print
knit_print.NextBestMTD	knit_print
knit_print.NextBestNCRM	knit_print
knit_print.NextBestNCRMLoss	knit_print
knit_print.NextBestOrdinal	knit_print
knit_print.NextBestProbMTDLTE	knit_print
knit_print.NextBestProbMTDMinDist	knit_print
knit_print.NextBestTD	knit_print
knit_print.NextBestTDsamples	knit_print
knit_print.NextBestThreePlusThree	knit_print
knit_print.OneParExpPrior	knit_print
knit_print.OneParLogNormalPrior	knit_print
knit_print.OpeningAll	knit_print
knit_print.OpeningAny	knit_print
knit_print.OpeningList	knit_print
knit_print.OpeningMinCohorts	knit_print
knit_print.OpeningMinDose	knit_print
knit_print.OpeningMinResponses	knit_print
knit_print.OpeningNone	knit_print
knit_print.RecruitmentRatio	knit_print
knit_print.RecruitmentUnlimited	knit_print
knit_print.RuleDesign	knit_print
knit_print.RuleDesignOrdinal	knit_print
knit_print.SafetyWindow	knit_print
knit_print.SafetyWindowConst	knit_print
knit_print.SafetyWindowSize	knit_print
knit_print.StartingDose	knit_print
knit_print.StoppingAll	knit_print
knit_print.StoppingAny	knit_print
knit_print.StoppingCohortsNearDose	knit_print
knit_print.StoppingHighestDose	knit_print
knit_print.StoppingList	knit_print
knit_print.StoppingLowestDoseHSRBeta	knit_print
knit_print.StoppingMaxGainCIRatio	knit_print
knit_print.StoppingMinCohorts	knit_print
knit_print.StoppingMinPatients	knit_print
knit_print.StoppingMissingDose	knit_print
knit_print.StoppingMTDCV	knit_print
knit_print.StoppingMTDdistribution	knit_print
knit_print.StoppingOrdinal	knit_print
knit_print.StoppingPatientsNearDose	knit_print
knit_print.StoppingSpecificDose	knit_print
knit_print.StoppingTargetBiomarker	knit_print
knit_print.StoppingTargetProb	knit_print
knit_print.StoppingTDCIRatio	knit_print
knit_print.TDDesign	knit_print
knit_print.TDsamplesDesign	knit_print
knit_print.TwoDrugsCombo	knit_print
LogisticIndepBeta	LogisticIndepBeta-class
LogisticIndepBeta-class	LogisticIndepBeta-class
LogisticKadane	LogisticKadane-class
LogisticKadane-class	LogisticKadane-class
LogisticKadaneBetaGamma	LogisticKadaneBetaGamma-class
LogisticKadaneBetaGamma-class	LogisticKadaneBetaGamma-class
LogisticLogNormal	LogisticLogNormal-class
LogisticLogNormal-class	LogisticLogNormal-class
LogisticLogNormalGrouped	LogisticLogNormalGrouped-class
LogisticLogNormalGrouped-class	LogisticLogNormalGrouped-class
LogisticLogNormalMixture	LogisticLogNormalMixture-class
LogisticLogNormalMixture-class	LogisticLogNormalMixture-class
LogisticLogNormalOrdinal	LogisticLogNormalOrdinal-class
LogisticLogNormalOrdinal-class	LogisticLogNormalOrdinal-class
LogisticLogNormalSub	LogisticLogNormalSub-class
LogisticLogNormalSub-class	LogisticLogNormalSub-class
LogisticNormal	LogisticNormal-class
LogisticNormal-class	LogisticNormal-class
LogisticNormalFixedMixture	LogisticNormalFixedMixture-class
LogisticNormalFixedMixture-class	LogisticNormalFixedMixture-class
LogisticNormalMixture	LogisticNormalMixture-class
LogisticNormalMixture-class	LogisticNormalMixture-class
logit	logit
log_trace	enable_logging
match_within_tolerance	match_within_tolerance
maxDose	maxDose
maxDose,IncrementsComboCartesian,DataCombo-method	maxDose
maxDose,IncrementsComboOneDrugOnly,DataCombo-method	maxDose
maxDose,IncrementsDoseLevels,Data-method	maxDose
maxDose,IncrementsHSRBeta,Data-method	maxDose
maxDose,IncrementsMaxToxProb,Data-method	maxDose
maxDose,IncrementsMaxToxProb,DataOrdinal-method	maxDose
maxDose,IncrementsMin,Data-method	maxDose
maxDose,IncrementsMin,DataCombo-method	maxDose
maxDose,IncrementsMin,DataOrdinal-method	maxDose
maxDose,IncrementsOrdinal,DataOrdinal-method	maxDose
maxDose,IncrementsRelative,Data-method	maxDose
maxDose,IncrementsRelativeDLT,Data-method	maxDose
maxDose,IncrementsRelativeDLTCurrent,Data-method	maxDose
maxDose,IncrementsRelativeParts,DataParts-method	maxDose
maxDose-IncrementsComboCartesian	maxDose
maxDose-IncrementsComboOneDrugOnly	maxDose
maxDose-IncrementsDoseLevels	maxDose
maxDose-IncrementsHSRBeta	maxDose
maxDose-IncrementsMaxToxProb	maxDose
maxDose-IncrementsMin	maxDose
maxDose-IncrementsOrdinal	maxDose
maxDose-IncrementsRelative	maxDose
maxDose-IncrementsRelativeDLT	maxDose
maxDose-IncrementsRelativeDLTCurrent	maxDose
maxDose-IncrementsRelativeParts	maxDose
maxRecruits	maxRecruits
maxRecruits,RecruitmentRatio-method	maxRecruits
maxRecruits,RecruitmentUnlimited-method	maxRecruits
maxRecruits-RecruitmentRatio	maxRecruits
maxRecruits-RecruitmentUnlimited	maxRecruits
maxSize	maxSize
maxSize,CohortSize-method	maxSize
maxSize-CohortSize	maxSize
mcmc	mcmc
mcmc,Data,LogisticIndepBeta,McmcOptions-method	mcmc
mcmc,DataCombo,TwoDrugsCombo,McmcOptions-method	mcmc
mcmc,DataDual,EffFlexi,McmcOptions-method	mcmc
mcmc,DataDual,Effloglog,McmcOptions-method	mcmc
mcmc,DataMixture,GeneralModel,McmcOptions-method	mcmc
mcmc,DataOrdinal,LogisticLogNormalOrdinal,McmcOptions-method	mcmc
mcmc,GeneralData,DualEndpointBeta,McmcOptions-method	mcmc
mcmc,GeneralData,DualEndpointEmax,McmcOptions-method	mcmc
mcmc,GeneralData,DualEndpointRW,McmcOptions-method	mcmc
mcmc,GeneralData,GeneralModel,McmcOptions-method	mcmc
mcmc,GeneralData,OneParExpPrior,McmcOptions-method	mcmc
mcmc,GeneralData,OneParLogNormalPrior,McmcOptions-method	mcmc
mcmc,HierarchicalData,HierarchicalModel,McmcOptions-method	mcmc
mcmc-Data-LogisticIndepBeta	mcmc
mcmc-DataDual-EffFlexi	mcmc
mcmc-DataDual-Effloglog	mcmc
mcmc-DataMixture	mcmc
mcmc-DataOrdinal-LogisticLogNormalOrdinal	mcmc
mcmc-GeneralData	mcmc
mcmc-GeneralData-DualEndpointBeta	mcmc
mcmc-GeneralData-DualEndpointEmax	mcmc
mcmc-GeneralData-DualEndpointRW	mcmc
mcmc-GeneralData-OneParExpPrior	mcmc
mcmc-GeneralData-OneParLogNormalPrior	mcmc
McmcOptions	McmcOptions-class
McmcOptions-class	McmcOptions-class
MinimalInformative	MinimalInformative
minSize	minSize
minSize,CohortSize-method	minSize
minSize-CohortSize	minSize
ModelEff	ModelEff-class
ModelEff-class	ModelEff-class
ModelLogNormal	ModelLogNormal-class
ModelLogNormal-class	ModelLogNormal-class
ModelParamsNormal	ModelParamsNormal-class
ModelParamsNormal-class	ModelParamsNormal-class
ModelPseudo	ModelPseudo-class
ModelPseudo-class	ModelPseudo-class
ModelTox	ModelTox-class
ModelTox-class	ModelTox-class
myBayesLogit	myBayesLogit
names,Samples-method	names-Samples-method
names-Samples	names-Samples-method
NextBest	NextBest-class
nextBest	nextBest
nextBest,NextBestDualEndpoint,numeric,Samples,DualEndpoint,Data-method	nextBest
nextBest,NextBestEWOC,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestInfTheory,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestMaxGain,numeric,missing,ModelTox,DataDual-method	nextBest
nextBest,NextBestMaxGainSamples,numeric,Samples,ModelTox,DataDual-method	nextBest
nextBest,NextBestMinDist,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestMTD,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestNCRM,matrix,Samples,TwoDrugsCombo,DataCombo-method	nextBest
nextBest,NextBestNCRM,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestNCRM,numeric,Samples,GeneralModel,DataParts-method	nextBest
nextBest,NextBestNCRMLoss,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestOrdinal,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestOrdinal,numeric,Samples,LogisticLogNormalOrdinal,DataOrdinal-method	nextBest
nextBest,NextBestProbMTDLTE,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestProbMTDMinDist,numeric,Samples,GeneralModel,Data-method	nextBest
nextBest,NextBestTD,numeric,missing,LogisticIndepBeta,Data-method	nextBest
nextBest,NextBestTDsamples,numeric,Samples,LogisticIndepBeta,Data-method	nextBest
nextBest,NextBestThreePlusThree,missing,missing,missing,Data-method	nextBest
NextBest-class	NextBest-class
nextBest-NextBestDualEndpoint	nextBest
nextBest-NextBestEWOC	nextBest
nextBest-NextBestInfTheory	nextBest
nextBest-NextBestMaxGain	nextBest
nextBest-NextBestMaxGainSamples	nextBest
nextBest-NextBestMinDist	nextBest
nextBest-NextBestMTD	nextBest
nextBest-NextBestNCRM	nextBest
nextBest-NextBestNCRM-DataParts	nextBest
nextBest-NextBestNCRMLoss	nextBest
nextBest-NextBestOrdinal	nextBest
nextBest-NextBestProbMTDLTE	nextBest
nextBest-NextBestProbMTDMinDist	nextBest
nextBest-NextBestTD	nextBest
nextBest-NextBestTDsamples	nextBest
nextBest-NextBestThreePlusThree	nextBest
NextBestDualEndpoint	NextBestDualEndpoint-class
NextBestDualEndpoint-class	NextBestDualEndpoint-class
NextBestEWOC	NextBestEWOC-class
NextBestEWOC-class	NextBestEWOC-class
NextBestInfTheory	NextBestInfTheory-class
NextBestInfTheory-class	NextBestInfTheory-class
NextBestMaxGain	NextBestMaxGain-class
NextBestMaxGain-class	NextBestMaxGain-class
NextBestMaxGainSamples	NextBestMaxGainSamples-class
NextBestMaxGainSamples-class	NextBestMaxGainSamples-class
NextBestMinDist	NextBestMinDist-class
NextBestMinDist-class	NextBestMinDist-class
NextBestMTD	NextBestMTD-class
NextBestMTD-class	NextBestMTD-class
NextBestNCRM	NextBestNCRM-class
NextBestNCRM-class	NextBestNCRM-class
NextBestNCRMLoss	NextBestNCRMLoss-class
NextBestNCRMLoss-class	NextBestNCRMLoss-class
NextBestOrdinal	NextBestOrdinal-class
NextBestOrdinal-class	NextBestOrdinal-class
NextBestProbMTDLTE	NextBestProbMTDLTE-class
NextBestProbMTDLTE-class	NextBestProbMTDLTE-class
NextBestProbMTDMinDist	NextBestProbMTDMinDist-class
NextBestProbMTDMinDist-class	NextBestProbMTDMinDist-class
NextBestTD	NextBestTD-class
NextBestTD-class	NextBestTD-class
NextBestTDsamples	NextBestTDsamples-class
NextBestTDsamples-class	NextBestTDsamples-class
NextBestThreePlusThree	NextBestThreePlusThree-class
NextBestThreePlusThree-class	NextBestThreePlusThree-class
ngrid	ngrid
ngrid,Data-method	ngrid
ngrid-Data	ngrid
NoArmCondition	NoArmCondition-class
NoArmCondition-class	NoArmCondition-class
OneParExpPrior	OneParExpPrior-class
OneParExpPrior-class	OneParExpPrior-class
OneParLogNormalPrior	OneParLogNormalPrior-class
OneParLogNormalPrior-class	OneParLogNormalPrior-class
openArm	openArm
openArm,ArmConditionAll-method	openArm
openArm,ArmConditionAny-method	openArm
openArm,ArmConditionList-method	openArm
openArm,ArmFinishedCondition-method	openArm
openArm,ArmMinDoseCondition-method	openArm
openArm,NoArmCondition-method	openArm
openArm-ArmConditionAll	openArm
openArm-ArmConditionAny	openArm
openArm-ArmConditionList	openArm
openArm-ArmFinishedCondition	openArm
openArm-ArmMinDoseCondition	openArm
openArm-NoArmCondition	openArm
openCohort	openCohort
openCohort,OpeningAll-method	openCohort
openCohort,OpeningAny-method	openCohort
openCohort,OpeningList-method	openCohort
openCohort,OpeningMinCohorts-method	openCohort
openCohort,OpeningMinDose-method	openCohort
openCohort,OpeningMinResponses-method	openCohort
openCohort,OpeningNone-method	openCohort
openCohort-OpeningAll	openCohort
openCohort-OpeningAny	openCohort
openCohort-OpeningList	openCohort
openCohort-OpeningMinCohorts	openCohort
openCohort-OpeningMinDose	openCohort
openCohort-OpeningMinResponses	openCohort
openCohort-OpeningNone	openCohort
Opening	Opening-class
Opening-class	Opening-class
OpeningAll	OpeningAll-class
OpeningAll-class	OpeningAll-class
OpeningAny	OpeningAny-class
OpeningAny-class	OpeningAny-class
OpeningList	OpeningList-class
OpeningList-class	OpeningList-class
OpeningMinCohorts	OpeningMinCohorts-class
OpeningMinCohorts-class	OpeningMinCohorts-class
OpeningMinDose	OpeningMinDose-class
OpeningMinDose-class	OpeningMinDose-class
OpeningMinResponses	OpeningMinResponses-class
OpeningMinResponses-class	OpeningMinResponses-class
OpeningNone	OpeningNone-class
OpeningNone-class	OpeningNone-class
or,ArmCondition,ArmCondition-method	or-ArmCondition-ArmCondition-method
or,Opening,Opening-method	or-Opening-Opening-method
or-Stopping-Stopping	or-Stopping-Stopping
or-Stopping-StoppingAny	or-Stopping-StoppingAny
or-StoppingAny-Stopping	or-StoppingAny-Stopping
pinvGamma	pinvGamma
plot,ComboSimulations,missing-method	plot-ComboSimulations-missing-method
plot,ComboSimulationsSummary,missing-method	plot-ComboSimulationsSummary-missing-method
plot,Data,missing-method	plot-Data
plot,Data,ModelTox-method	plot-Data-ModelTox-method
plot,DataCombo,missing-method	plot-DataCombo-missing-method
plot,DataDA,missing-method	plot-DataDA-missing-method
plot,DataDual,missing-method	plot-DataDual-missing-method
plot,DataDual,ModelEff-method	plot-DataDual-ModelEff-method
plot,DataOrdinal,missing-method	plot-Data
plot,DualSimulations,missing-method	plot-DualSimulations-missing-method
plot,DualSimulationsSummary,missing-method	plot-DualSimulationsSummary-missing-method
plot,GeneralSimulations,missing-method	plot-GeneralSimulations-missing-method
plot,GeneralSimulationsSummary,missing-method	plot-GeneralSimulationsSummary-missing-method
plot,HierarchicalData,missing-method	plot-HierarchicalData-missing-method
plot,HierarchicalSamples,HierarchicalModel-method	plot-HierarchicalSamples-HierarchicalModel-method
plot,PseudoDualFlexiSimulations,missing-method	plot-PseudoDualFlexiSimulations-missing-method
plot,PseudoDualSimulations,missing-method	plot-PseudoDualSimulations-missing-method
plot,PseudoDualSimulationsSummary,missing-method	plot-PseudoDualSimulationsSummary-missing-method
plot,PseudoSimulationsSummary,missing-method	plot-PseudoSimulationsSummary-missing-method
plot,Samples,DALogisticLogNormal-method	plot-Samples-DALogisticLogNormal-method
plot,Samples,DualEndpoint-method	plot-Samples-DualEndpoint-method
plot,Samples,GeneralModel-method	plot-Samples-GeneralModel-method
plot,Samples,ModelEff-method	plot-Samples-ModelEff-method
plot,Samples,ModelTox-method	plot-Samples-ModelTox-method
plot,Samples,TwoDrugsCombo-method	plot-Samples-TwoDrugsCombo-method
plot,SimulationsSummary,missing-method	plot-SimulationsSummary-missing-method
plot-ComboSimulations-missing	plot-ComboSimulations-missing-method
plot-ComboSimulationsSummary-missing	plot-ComboSimulationsSummary-missing-method
plot-Data	plot-Data
plot-DataCombo	plot-DataCombo-missing-method
plot-DataDA	plot-DataDA-missing-method
plot-DataDual	plot-DataDual-missing-method
plot-DualSimulations-missing	plot-DualSimulations-missing-method
plot-DualSimulationsSummary-missing	plot-DualSimulationsSummary-missing-method
plot-GeneralSimulations-missing	plot-GeneralSimulations-missing-method
plot-GeneralSimulationsSummary-missing	plot-GeneralSimulationsSummary-missing-method
plot-HierarchicalData	plot-HierarchicalData-missing-method
plot-PseudoDualFlexiSimulations-missing	plot-PseudoDualFlexiSimulations-missing-method
plot-PseudoDualSimulations-missing	plot-PseudoDualSimulations-missing-method
plot-PseudoDualSimulationsSummary-missing	plot-PseudoDualSimulationsSummary-missing-method
plot-PseudoSimulationsSummary-missing	plot-PseudoSimulationsSummary-missing-method
plot-SimulationsSummary-missing	plot-SimulationsSummary-missing-method
plot.gtable	plot.gtable
plotDualResponses	plotDualResponses
plotDualResponses,ModelTox,missing,ModelEff,missing-method	plotDualResponses
plotDualResponses,ModelTox,Samples,ModelEff,Samples-method	plotDualResponses
plotGain	plotGain
plotGain,ModelTox,missing,ModelEff,missing-method	plotGain
plotGain,ModelTox,Samples,ModelEff,Samples-method	plotGain
positive_number	positive_number
print.gtable	plot.gtable
printVignette	printVignette
prob	prob
prob,matrix,TwoDrugsCombo,Samples-method	prob
prob,numeric,DualEndpoint,Samples-method	prob
prob,numeric,LogisticIndepBeta,missing-method	prob
prob,numeric,LogisticIndepBeta,Samples-method	prob
prob,numeric,LogisticKadane,Samples-method	prob
prob,numeric,LogisticKadaneBetaGamma,Samples-method	prob
prob,numeric,LogisticLogNormal,Samples-method	prob
prob,numeric,LogisticLogNormalGrouped,Samples-method	prob
prob,numeric,LogisticLogNormalMixture,Samples-method	prob
prob,numeric,LogisticLogNormalOrdinal,Samples-method	prob
prob,numeric,LogisticLogNormalSub,Samples-method	prob
prob,numeric,LogisticNormal,Samples-method	prob
prob,numeric,LogisticNormalFixedMixture,Samples-method	prob
prob,numeric,LogisticNormalMixture,Samples-method	prob
prob,numeric,OneParExpPrior,Samples-method	prob
prob,numeric,OneParLogNormalPrior,Samples-method	prob
prob,numeric,ProbitLogNormal,Samples-method	prob
prob,numeric,ProbitLogNormalRel,Samples-method	prob
prob,numeric,TwoDrugsCombo,Samples-method	prob
prob-DualEndpoint	prob
prob-LogisticIndepBeta	prob
prob-LogisticIndepBeta-noSamples	prob
prob-LogisticKadane	prob
prob-LogisticKadaneBetaGamma	prob
prob-LogisticLogNormal	prob
prob-LogisticLogNormalGrouped	prob
prob-LogisticLogNormalMixture	prob
prob-LogisticLogNormalOrdinal	prob
prob-LogisticLogNormalSub	prob
prob-LogisticNormal	prob
prob-LogisticNormalFixedMixture	prob
prob-LogisticNormalMixture	prob
prob-OneParExpPrior	prob
prob-OneParLogNormalPrior	prob
prob-ProbitLogNormal	prob
prob-ProbitLogNormalRel	prob
prob-TwoDrugsCombo	prob
prob-TwoDrugsCombo-matrix	prob
probFunction	probFunction
probFunction,GeneralModel-method	probFunction
probFunction,LogisticLogNormalOrdinal-method	probFunction
probFunction,ModelTox-method	probFunction
probFunction-GeneralModel	probFunction
probFunction-LogisticLogNormalOrdinal	probFunction
probFunction-ModelTox	probFunction
probit	probit
ProbitLogNormal	ProbitLogNormal-class
ProbitLogNormal-class	ProbitLogNormal-class
ProbitLogNormalLogDose	ProbitLogNormal-class
ProbitLogNormalRel	ProbitLogNormalRel-class
ProbitLogNormalRel-class	ProbitLogNormalRel-class
PseudoDualFlexiSimulations	PseudoDualFlexiSimulations-class
PseudoDualFlexiSimulations-class	PseudoDualFlexiSimulations-class
PseudoDualSimulations	PseudoDualSimulations-class
PseudoDualSimulations-class	PseudoDualSimulations-class
PseudoDualSimulationsSummary	PseudoDualSimulationsSummary-class
PseudoDualSimulationsSummary-class	PseudoDualSimulationsSummary-class
PseudoSimulations	PseudoSimulations-class
PseudoSimulations-class	PseudoSimulations-class
PseudoSimulationsSummary	PseudoSimulationsSummary-class
PseudoSimulationsSummary-class	PseudoSimulationsSummary-class
qinvGamma	qinvGamma
Quantiles2LogisticNormal	Quantiles2LogisticNormal
Recruitment	Recruitment-class
Recruitment-class	Recruitment-class
RecruitmentRatio	RecruitmentRatio-class
RecruitmentRatio-class	RecruitmentRatio-class
RecruitmentUnlimited	RecruitmentUnlimited-class
RecruitmentUnlimited-class	RecruitmentUnlimited-class
rinvGamma	rinvGamma
RuleDesign	RuleDesign-class
RuleDesign-class	RuleDesign-class
RuleDesignOrdinal	RuleDesignOrdinal-class
RuleDesignOrdinal-class	RuleDesignOrdinal-class
SafetyWindow	SafetyWindow-class
SafetyWindow-class	SafetyWindow-class
SafetyWindowConst	SafetyWindowConst-class
SafetyWindowConst-class	SafetyWindowConst-class
SafetyWindowSize	SafetyWindowSize-class
SafetyWindowSize-class	SafetyWindowSize-class
Samples	Samples-class
Samples-class	Samples-class
saveSample	saveSample
saveSample,McmcOptions-method	saveSample
saveSample-McmcOptions	saveSample
scenario	scenario
scenario,DADesign,DataDA,McmcOptions-method	scenario
scenario,Design,Data,McmcOptions-method	scenario
scenario,DesignCombo,DataCombo,McmcOptions-method	scenario
scenario,HierarchicalDesign,HierarchicalData,McmcOptions-method	scenario
scenario-DADesign	scenario
scenario-Design	scenario
scenario-DesignCombo	scenario
scenario-HierarchicalDesign	scenario
set_seed	set_seed
show,ComboSimulations-method	show-ComboSimulations-method
show,ComboSimulationsSummary-method	show-ComboSimulationsSummary-method
show,DualSimulationsSummary-method	show-DualSimulationsSummary-method
show,GeneralSimulations-method	show-GeneralSimulations-method
show,GeneralSimulationsSummary-method	show-GeneralSimulationsSummary-method
show,HierarchicalData-method	show-HierarchicalData-method
show,HierarchicalDesign-method	show-HierarchicalDesign-method
show,HierarchicalModel-method	show-HierarchicalModel-method
show,HierarchicalSimulations-method	show-HierarchicalSimulations-method
show,HierarchicalSimulationsSummary-method	show-HierarchicalSimulationsSummary-method
show,PseudoDualSimulationsSummary-method	show-PseudoDualSimulationsSummary-method
show,PseudoSimulationsSummary-method	show-PseudoSimulationsSummary-method
show,SimulationsSummary-method	show-SimulationsSummary-method
show-ComboSimulations	show-ComboSimulations-method
show-ComboSimulationsSummary	show-ComboSimulationsSummary-method
show-DualSimulationsSummary	show-DualSimulationsSummary-method
show-GeneralSimulations	show-GeneralSimulations-method
show-GeneralSimulationsSummary	show-GeneralSimulationsSummary-method
show-HierarchicalData	show-HierarchicalData-method
show-HierarchicalDesign	show-HierarchicalDesign-method
show-HierarchicalModel	show-HierarchicalModel-method
show-HierarchicalSimulations	show-HierarchicalSimulations-method
show-HierarchicalSimulationsSummary	show-HierarchicalSimulationsSummary-method
show-PseudoDualSimulationsSummary	show-PseudoDualSimulationsSummary-method
show-PseudoSimulationsSummary	show-PseudoSimulationsSummary-method
show-SimulationsSummary	show-SimulationsSummary-method
simulate,DADesign-method	simulate-DADesign-method
simulate,Design-method	simulate-Design-method
simulate,DesignCombo-method	simulate-DesignCombo-method
simulate,DesignGrouped-method	simulate-DesignGrouped-method
simulate,DualDesign-method	simulate-DualDesign-method
simulate,DualResponsesDesign-method	simulate-DualResponsesDesign-method
simulate,DualResponsesSamplesDesign-method	simulate-DualResponsesSamplesDesign-method
simulate,HierarchicalDesign-method	simulate-HierarchicalDesign-method
simulate,RuleDesign-method	simulate-RuleDesign-method
simulate,TDDesign-method	simulate-TDDesign-method
simulate,TDsamplesDesign-method	simulate-TDsamplesDesign-method
simulate-DesignGrouped	simulate-DesignGrouped-method
Simulations	Simulations-class
Simulations-class	Simulations-class
SimulationsSummary	SimulationsSummary-class
SimulationsSummary-class	SimulationsSummary-class
singleDrugData	singleDrugData
singleDrugData,DataCombo-method	singleDrugData
singleDrugData-DataCombo	singleDrugData
size	size
size,CohortSizeConst-method	size
size,CohortSizeDLT-method	size
size,CohortSizeMax-method	size
size,CohortSizeMin-method	size
size,CohortSizeOrdinal-method	size
size,CohortSizeParts-method	size
size,CohortSizeRandom-method	size
size,CohortSizeRange-method	size
size,McmcOptions-method	size
size,Samples-method	size
size-CohortSizeConst	size
size-CohortSizeDLT	size
size-CohortSizeMax	size
size-CohortSizeMin	size
size-CohortSizeOrdinal	size
size-CohortSizeParts	size
size-CohortSizeRandom	size
size-CohortSizeRange	size
size-McmcOptions	size
size-Samples	size
StartingDose	StartingDose-class
StartingDose-class	StartingDose-class
Stopping	Stopping-class
Stopping-class	Stopping-class
StoppingAll	StoppingAll-class
StoppingAll-class	StoppingAll-class
StoppingAny	StoppingAny-class
StoppingAny-class	StoppingAny-class
StoppingCohortsNearDose	StoppingCohortsNearDose-class
StoppingCohortsNearDose-class	StoppingCohortsNearDose-class
StoppingExternal	StoppingExternal-class
StoppingExternal-class	StoppingExternal-class
StoppingHighestDose	StoppingHighestDose-class
StoppingHighestDose-class	StoppingHighestDose-class
StoppingList	StoppingList-class
StoppingList-class	StoppingList-class
StoppingLowestDoseHSRBeta	StoppingLowestDoseHSRBeta-class
StoppingLowestDoseHSRBeta-class	StoppingLowestDoseHSRBeta-class
StoppingMaxGainCIRatio	StoppingMaxGainCIRatio-class
StoppingMaxGainCIRatio-class	StoppingMaxGainCIRatio-class
StoppingMinCohorts	StoppingMinCohorts-class
StoppingMinCohorts-class	StoppingMinCohorts-class
StoppingMinPatients	StoppingMinPatients-class
StoppingMinPatients-class	StoppingMinPatients-class
StoppingMissingDose	StoppingMissingDose-class
StoppingMissingDose-class	StoppingMissingDose-class
StoppingMTDCV	StoppingMTDCV-class
StoppingMTDCV-class	StoppingMTDCV-class
StoppingMTDdistribution	StoppingMTDdistribution-class
StoppingMTDdistribution-class	StoppingMTDdistribution-class
StoppingOrdinal	StoppingOrdinal-class
StoppingOrdinal-class	StoppingOrdinal-class
StoppingPatientsNearDose	StoppingPatientsNearDose-class
StoppingPatientsNearDose-class	StoppingPatientsNearDose-class
StoppingSpecificDose	StoppingSpecificDose-class
StoppingSpecificDose-class	StoppingSpecificDose-class
StoppingTargetBiomarker	StoppingTargetBiomarker-class
StoppingTargetBiomarker-class	StoppingTargetBiomarker-class
StoppingTargetProb	StoppingTargetProb-class
StoppingTargetProb-class	StoppingTargetProb-class
StoppingTDCIRatio	StoppingTDCIRatio-class
StoppingTDCIRatio-class	StoppingTDCIRatio-class
stopTrial	stopTrial
stopTrial,StoppingAll,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingAny,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingCohortsNearDose,numeric,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingExternal,numeric,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingHighestDose,numeric,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingList,ANY,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingLowestDoseHSRBeta,numeric,Samples,GeneralModel,GeneralData-method	stopTrial
stopTrial,StoppingMaxGainCIRatio,ANY,missing,ModelTox,DataDual-method	stopTrial
stopTrial,StoppingMaxGainCIRatio,ANY,Samples,ModelTox,DataDual-method	stopTrial
stopTrial,StoppingMinCohorts,ANY,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingMinPatients,ANY,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingMissingDose,numeric,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingMTDCV,numeric,Samples,GeneralModel,ANY-method	stopTrial
stopTrial,StoppingMTDdistribution,numeric,Samples,GeneralModel,Data-method	stopTrial
stopTrial,StoppingOrdinal,numeric,ANY,ANY,ANY-method	stopTrial
stopTrial,StoppingOrdinal,numeric,ANY,LogisticLogNormalOrdinal,DataOrdinal-method	stopTrial
stopTrial,StoppingPatientsNearDose,numeric,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingSpecificDose,numeric,ANY,ANY,GeneralData-method	stopTrial
stopTrial,StoppingTargetBiomarker,numeric,Samples,DualEndpoint,ANY-method	stopTrial
stopTrial,StoppingTargetProb,numeric,Samples,GeneralModel,ANY-method	stopTrial
stopTrial,StoppingTDCIRatio,ANY,missing,ModelTox,ANY-method	stopTrial
stopTrial,StoppingTDCIRatio,ANY,Samples,ModelTox,ANY-method	stopTrial
stopTrial-StoppingAll	stopTrial
stopTrial-StoppingAny	stopTrial
stopTrial-StoppingCohortsNearDose	stopTrial
stopTrial-StoppingExternal	stopTrial
stopTrial-StoppingHighestDose	stopTrial
stopTrial-StoppingList	stopTrial
stopTrial-StoppingLowestDoseHSRBeta	stopTrial
stopTrial-StoppingMaxGainCIRatio	stopTrial
stopTrial-StoppingMinCohorts	stopTrial
stopTrial-StoppingMinPatients	stopTrial
stopTrial-StoppingMissingDose	stopTrial
stopTrial-StoppingMTDCV	stopTrial
stopTrial-StoppingMTDdistribution	stopTrial
stopTrial-StoppingOrdinal	stopTrial
stopTrial-StoppingPatientsNearDose	stopTrial
stopTrial-StoppingSpecificDose	stopTrial
stopTrial-StoppingTargetBiomarker	stopTrial
stopTrial-StoppingTargetProb	stopTrial
stopTrial-StoppingTDCIRatio	stopTrial
subset-Data	subset-Data
summary,ComboSimulations-method	summary-ComboSimulations-method
summary,DualSimulations-method	summary-DualSimulations-method
summary,GeneralSimulations-method	summary-GeneralSimulations-method
summary,HierarchicalSimulations-method	summary-HierarchicalSimulations-method
summary,PseudoDualFlexiSimulations-method	summary-PseudoDualFlexiSimulations-method
summary,PseudoDualSimulations-method	summary-PseudoDualSimulations-method
summary,PseudoSimulations-method	summary-PseudoSimulations-method
summary,Simulations-method	summary-Simulations-method
summary-ComboSimulations	summary-ComboSimulations-method
summary-DualSimulations	summary-DualSimulations-method
summary-GeneralSimulations	summary-GeneralSimulations-method
summary-HierarchicalSimulations	summary-HierarchicalSimulations-method
summary-PseudoDualFlexiSimulations	summary-PseudoDualFlexiSimulations-method
summary-PseudoDualSimulations	summary-PseudoDualSimulations-method
summary-PseudoSimulations	summary-PseudoSimulations-method
summary-Simulations	summary-Simulations-method
TDDesign	TDDesign-class
TDDesign-class	TDDesign-class
TDsamplesDesign	TDsamplesDesign-class
TDsamplesDesign-class	TDsamplesDesign-class
test_format	check_format
test_length	check_length
test_probabilities	check_probabilities
test_probability	check_probability
test_probability_range	check_probability_range
test_range	check_range
ThreePlusThreeDesign	RuleDesign-class
tidy	tidy
tidy,ArmConditionList-method	tidy
tidy,CohortSizeDLT-method	tidy
tidy,CohortSizeMax-method	tidy
tidy,CohortSizeMin-method	tidy
tidy,CohortSizeParts-method	tidy
tidy,CohortSizeRange-method	tidy
tidy,ComboSimulations-method	tidy
tidy,CrmPackClass-method	tidy
tidy,Data-method	tidy
tidy,DataCombo-method	tidy
tidy,DataDA-method	tidy
tidy,DataDual-method	tidy
tidy,DataGrouped-method	tidy
tidy,DataMixture-method	tidy
tidy,DataOrdinal-method	tidy
tidy,DataParts-method	tidy
tidy,DesignArm-method	tidy
tidy,DesignCombo-method	tidy
tidy,DualDesign-method	tidy
tidy,Effloglog-method	tidy
tidy,GeneralData-method	tidy
tidy,HierarchicalData-method	tidy
tidy,HierarchicalDesign-method	tidy
tidy,HierarchicalModel-method	tidy
tidy,HierarchicalSamples-method	tidy
tidy,HierarchicalSimulations-method	tidy
tidy,IncrementsMaxToxProb-method	tidy
tidy,IncrementsMin-method	tidy
tidy,IncrementsRelative-method	tidy
tidy,IncrementsRelativeDLT-method	tidy
tidy,IncrementsRelativeParts-method	tidy
tidy,LogisticIndepBeta-method	tidy
tidy,NextBestNCRM-method	tidy
tidy,NextBestNCRMLoss-method	tidy
tidy,Samples-method	tidy
tidy,Simulations-method	tidy
tidy-ArmConditionList	tidy
tidy-CohortSizeDLT	tidy
tidy-CohortSizeMax	tidy
tidy-CohortSizeMin	tidy
tidy-CohortSizeParts	tidy
tidy-CohortSizeRange	tidy
tidy-ComboSimulations	tidy
tidy-CrmPackClass	tidy
tidy-Data	tidy
tidy-DataCombo	tidy
tidy-DataDA	tidy
tidy-DataDual	tidy
tidy-DataGrouped	tidy
tidy-DataMixture	tidy
tidy-DataOrdinal	tidy
tidy-DataParts	tidy
tidy-DesignArm	tidy
tidy-DesignCombo	tidy
tidy-DualDesign	tidy
tidy-Effloglog	tidy
tidy-GeneralData	tidy
tidy-HierarchicalData	tidy
tidy-HierarchicalDesign	tidy
tidy-HierarchicalModel	tidy
tidy-HierarchicalSamples	tidy
tidy-HierarchicalSimulations	tidy
tidy-IncrementsMaxToxProb	tidy
tidy-IncrementsMin	tidy
tidy-IncrementsRelative	tidy
tidy-IncrementsRelativeDLT	tidy
tidy-IncrementsRelativeParts	tidy
tidy-LogisticIndepBeta	tidy
tidy-NextBestNCRM	tidy
tidy-NextBestNCRMLoss	tidy
tidy-Samples	tidy
tidy-Simulations	tidy
TITELogisticLogNormal	TITELogisticLogNormal-class
TITELogisticLogNormal-class	TITELogisticLogNormal-class
TITELogisticLogNormalSub	TITELogisticLogNormalSub-class
TITELogisticLogNormalSub-class	TITELogisticLogNormalSub-class
TwoDrugsCombo	TwoDrugsCombo-class
TwoDrugsCombo-class	TwoDrugsCombo-class
update,Data-method	update-Data-method
update,DataCombo-method	update-DataCombo-method
update,DataDA-method	update-DataDA-method
update,DataDual-method	update-DataDual-method
update,DataOrdinal-method	update-DataOrdinal-method
update,DataParts-method	update-DataParts-method
update,HierarchicalData-method	update-HierarchicalData-method
update,ModelPseudo-method	update-ModelPseudo-method
update-Data	update-Data-method
update-DataCombo	update-DataCombo-method
update-DataDA	update-DataDA-method
update-DataDual	update-DataDual-method
update-DataOrdinal	update-DataOrdinal-method
update-DataParts	update-DataParts-method
update-HierarchicalData	update-HierarchicalData-method
update-ModelPseudo	update-ModelPseudo-method
Validate	Validate
v_arm_condition	v_arm_condition
v_arm_finished_condition	v_arm_condition
v_arm_min_dose_condition	v_arm_condition
v_backfill	v_backfill
v_cohort_size	v_cohort_size
v_cohort_size_const	v_cohort_size
v_cohort_size_dlt	v_cohort_size
v_cohort_size_max	v_cohort_size
v_cohort_size_ordinal	v_increments
v_cohort_size_parts	v_cohort_size
v_cohort_size_random	v_cohort_size
v_cohort_size_range	v_cohort_size
v_combo_simulations	v_general_simulations
v_data	v_data_objects
v_data_combo	v_data_objects
v_data_da	v_data_objects
v_data_dual	v_data_objects
v_data_grouped	v_data_objects
v_data_mixture	v_data_objects
v_data_objects	v_data_objects
v_data_ordinal	v_data_objects
v_data_parts	v_data_objects
v_da_simulations	v_general_simulations
v_design	v_design
v_design_arm	v_hierarchical_design
v_design_combo	v_design
v_design_grouped	v_design
v_dual_simulations	v_general_simulations
v_general_data	v_data_objects
v_general_model	v_model_objects
v_general_simulations	v_general_simulations
v_hierarchical_data	v_data_objects
v_hierarchical_design	v_hierarchical_design
v_hierarchical_model	v_model_objects
v_hierarchical_samples	v_samples_objects
v_hierarchical_simulations	v_general_simulations
v_increments	v_increments
v_increments_dose_levels	v_increments
v_increments_hsr_beta	v_increments
v_increments_maxtoxprob	v_increments
v_increments_min	v_increments
v_increments_ordinal	v_increments
v_increments_relative	v_increments
v_increments_relative_dlt	v_increments
v_increments_relative_parts	v_increments
v_logisticlognormalordinal	v_model_objects
v_mcmcoptions_objects	v_mcmcoptions_objects
v_mcmc_options	v_mcmcoptions_objects
v_model_da_logistic_log_normal	v_model_objects
v_model_dual_endpoint	v_model_objects
v_model_dual_endpoint_beta	v_model_objects
v_model_dual_endpoint_emax	v_model_objects
v_model_dual_endpoint_rw	v_model_objects
v_model_eff_flexi	v_model_objects
v_model_eff_log_log	v_model_objects
v_model_logistic_indep_beta	v_model_objects
v_model_logistic_kadane	v_model_objects
v_model_logistic_kadane_beta_gamma	v_model_objects
v_model_logistic_log_normal_mix	v_model_objects
v_model_logistic_normal_fixed_mix	v_model_objects
v_model_logistic_normal_mix	v_model_objects
v_model_objects	v_model_objects
v_model_one_par_exp_normal_prior	v_model_objects
v_model_one_par_exp_prior	v_model_objects
v_model_params	v_model_params
v_model_params_normal	v_model_params
v_model_tite_logistic_log_normal	v_model_objects
v_model_two_drugs_combo	v_model_objects
v_next_best	v_next_best
v_next_best_dual_endpoint	v_next_best
v_next_best_ewoc	v_next_best
v_next_best_inf_theory	v_next_best
v_next_best_max_gain_samples	v_next_best
v_next_best_min_dist	v_next_best
v_next_best_mtd	v_next_best
v_next_best_ncrm	v_next_best
v_next_best_ncrm_loss	v_next_best
v_next_best_ordinal	v_next_best
v_next_best_prob_mtd_lte	v_next_best
v_next_best_prob_mtd_min_dist	v_next_best
v_next_best_td	v_next_best
v_next_best_td_samples	v_next_best
v_opening	v_opening
v_opening_min_cohorts	v_opening
v_opening_min_dose	v_opening
v_opening_min_responses	v_opening
v_pseudo_dual_flex_simulations	v_pseudo_simulations
v_pseudo_dual_simulations	v_pseudo_simulations
v_pseudo_simulations	v_pseudo_simulations
v_recruitment	v_recruitment
v_recruitment_ratio	v_recruitment
v_rule_design	v_design
v_rule_design_ordinal	v_design
v_safety_window	v_safety_window
v_safety_window_const	v_safety_window
v_safety_window_size	v_safety_window
v_samples	v_samples_objects
v_samples_objects	v_samples_objects
v_simulations	v_general_simulations
v_starting_dose	v_starting_dose
v_stopping	v_stopping
v_stopping_all	v_stopping
v_stopping_cohorts_near_dose	v_stopping
v_stopping_list	v_stopping
v_stopping_min_cohorts	v_stopping
v_stopping_min_patients	v_stopping
v_stopping_mtd_cv	v_stopping
v_stopping_mtd_distribution	v_stopping
v_stopping_patients_near_dose	v_stopping
v_stopping_target_biomarker	v_stopping
v_stopping_target_prob	v_stopping
v_stopping_tdci_ratio	v_stopping
windowLength	windowLength
windowLength,SafetyWindowConst-method	windowLength
windowLength,SafetyWindowSize-method	windowLength
windowLength-SafetyWindowConst	windowLength
windowLength-SafetyWindowSize	windowLength
[,Data,logical,missing,missing-method	subset-Data
[,Data,numeric,missing,missing-method	subset-Data
|,ArmCondition,ArmCondition-method	or-ArmCondition-ArmCondition-method
|,Opening,Opening-method	or-Opening-Opening-method
|,Stopping,Stopping-method	or-Stopping-Stopping
|,Stopping,StoppingAny-method	or-Stopping-StoppingAny
|,StoppingAny,Stopping-method	or-StoppingAny-Stopping
