Vignettes and other documentation
Vignettes from package 'gp3bayes'
gp3bayes::advanced-dynamic-pupillometry-0-5
Advanced Dynamic Pupillometry in gp3bayes 0.5
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R code
gp3bayes::advanced-optional-workflows
Advanced Optional Bayesian Workflows
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source
R code
gp3bayes::advanced-predictive-diagnostics
Advanced Predictive Diagnostics
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source
R code
gp3bayes::arma-and-temporal-diagnostics
Bounded ARMA and Temporal Diagnostics
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source
R code
gp3bayes::backend-portability
Backend Portability and Installation
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source
R code
gp3bayes::backend-reliability
Backend Reliability, Parity and Object Schemas
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source
R code
gp3bayes::bayesian-dynamic-pupillometry
Bayesian dynamic pupillometry: governed foundation
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source
R code
gp3bayes::binary-end-to-end
End-to-End Hierarchical Binary Workflow
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source
R code
gp3bayes::binocular-pupil-models
Joint Binocular Pupil Models
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source
R code
gp3bayes::computational-governance-and-model-cards
Computational Governance and Model Cards
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R code
gp3bayes::declared-prior-versus-posterior
Declared Priors versus Fitted Posteriors
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R code
gp3bayes::duration-end-to-end
End-to-End Hierarchical Lognormal Duration Workflow
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R code
gp3bayes::end-to-end-evidence-showcase
End-to-End Evidence and Publication Showcase
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R code
gp3bayes::estimands-and-sensitivity
First-Class Estimands and Sensitivity Workflows
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R code
gp3bayes::evidence-graphics-and-governance
Evidence Graphics and Governance
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R code
gp3bayes::experimental-pupil-response-shape
Experimental Interpretable Pupil Response Shape
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R code
gp3bayes::fitting-pupil-timecourse-models
Fitting hierarchical pupil time-course models
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source
R code
gp3bayes::functional-dynamics-and-predictive-calibration
Functional Dynamics and Predictive Calibration
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source
R code
gp3bayes::gaussian-process-pupil-trajectories
Gaussian-Process Pupil Trajectories
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source
R code
gp3bayes::gazepoint-pupil-interoperability
Gazepoint pupil-data interoperability
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source
R code
gp3bayes::governed-pupil-model-comparison
Governed Predictive Model Comparison
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source
R code
gp3bayes::grouped-loo-influence
Grouped PSIS-LOO Influence
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source
R code
gp3bayes::hierarchical-effect-atlas
Hierarchical Effect and Variance Atlases
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source
R code
gp3bayes::hierarchical-effects-and-uncertainty
Hierarchical Effects and Predictive Uncertainty
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R code
gp3bayes::loo-influence-and-model-comparison
LOO Influence and Predictive Model Comparison
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R code
gp3bayes::loo-influence-atlas
Pointwise LOO Influence Atlases
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R code
gp3bayes::measurement-error-and-missing-pupil-data
Measurement Uncertainty and Missing Pupil Data
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R code
gp3bayes::model-cards-and-reporting-inventories
Model Cards and Reporting Inventories
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R code
gp3bayes::optional-backend-installation
Optional Bayesian Backend Installation
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source
R code
gp3bayes::pathological-simulation-scenarios
Pathological Simulation Scenarios
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R code
gp3bayes::posterior-diagnostics
Sampling Diagnostics and Conservative Decisions
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R code
gp3bayes::posterior-exploration-and-graphics
Posterior Exploration and Publication Graphics
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R code
gp3bayes::pre-fit-design-diagnostics
Pre-fit Design-Support Diagnostics
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R code
gp3bayes::prediction-calibration-and-scoring
Prediction, Calibration, and Scoring
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R code
gp3bayes::prediction-contrasts-ranking-and-groups
Prediction Contrasts, Rankings, and Groups
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R code
gp3bayes::prediction-profiles-surfaces-and-contrasts
Prediction Profiles, Surfaces, and Contrast Profiles
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R code
gp3bayes::predictive-distribution-and-calibration-uncertainty
Predictive Distribution and Calibration Uncertainty
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R code
gp3bayes::public-api-map
Complete Public API Map
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R code
gp3bayes::publication-analysis-bundles
Publication-Ready Analysis Bundles
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R code
gp3bayes::publication-registries-and-dashboards
Publication Registries and Diagnostic Dashboards
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R code
gp3bayes::pupil-baseline-gaze-luminance-sensitivity
Baseline, gaze/PFE, and luminance sensitivity
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source
R code
gp3bayes::pupil-ppc-and-temporal-diagnostics
Pupil posterior predictive checks and temporal diagnostics
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R code
gp3bayes::pupil-preparation-and-auditing
Preparing and auditing pupil time courses
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R code
gp3bayes::pupil-temporal-validation
Validation for temporally dependent pupil data
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source
R code
gp3bayes::pupil-trajectories-and-estimands
Posterior pupil trajectories and declared estimands
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source
R code
gp3bayes::quality-hardening-and-failure-contracts
Quality Hardening and Failure Contracts
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R code
gp3bayes::recovery-diagnostics-for-publication
Parameter Recovery Diagnostics for Publication
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R code
gp3bayes::release-case-study
A Reproducible 0.2.0 Release Case Study
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R code
gp3bayes::reproducible-analysis-manifests
Analysis Manifests and Reproducible Bayesian Workflows
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R code
gp3bayes::robust-distributional-pupil-models
Robust and Distributional Pupil Models
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source
R code
gp3bayes::sbc-publication-diagnostics
Simulation-Based Calibration Diagnostics
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R code
gp3bayes::sensitivity-and-recovery
Prior Sensitivity and Simulation-Based Recovery
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R code
gp3bayes::sensitivity-atlas
Sensitivity Atlases
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R code
gp3bayes::sensitivity-evidence-workflow
Unified Sensitivity Suites and Evidence Inventories
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R code
gp3bayes::specification-closure
Specification Closure: Strict Readiness and Governed Validation
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R code
gp3bayes::stable-unified-workflow
A Stable Unified Workflow API
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R code
gp3bayes::synthetic-advanced-pupillometry-gallery
Synthetic Advanced Pupillometry Gallery
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R code
gp3bayes::synthetic-gazepoint-pupillometry-case-study
Synthetic Gazepoint pupillometry case study
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R code
gp3bayes::transformation-replay-and-detailed-ppc
Transformation Replay and Detailed Posterior Predictive Checks
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R code