Package: phylosem
Type: Package
Title: Phylogenetic Structural Equation Model
Version: 1.1.4
Date: 2024-04-02
Authors@R: 
    c(person(given = "James",
             family = "Thorson",
             role = c("aut", "cre"),
             email = "James.Thorson@noaa.gov",
             comment = c(ORCID = "0000-0001-7415-1010")),
      person(given = "Wouter",
             family = "van der Bijl",
             role = c("ctb"),
             email = "wouter@zoology.ubc.ca",
             comment = c(ORCID = "0000-0002-7366-1868"))
    )
Imports: sem, ape, phylobase, phylopath, methods
Depends: TMB, R (>= 4.0.0),
Suggests: semPlot, TreeTools, Rphylopars, phylolm, fishtree, phyr,
        knitr, rmarkdown, ggplot2, testthat, phylosignal, adephylo
Enhances: phytools, DiagrammeR
LinkingTo: RcppEigen, TMB
Description: Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using 
    structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>.  
    This implementation includes a minimal set of features, to 
    allow users to easily read all of the documentation and source code.  PCM using SEM 
    includes phylogenetic linear models and structural equation models as nested submodels, 
    but also allows imputation of missing values.  Features and comparison with other packages
    are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>. 
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.1
VignetteBuilder: knitr
URL: https://james-thorson-noaa.github.io/phylosem/
BugReports: https://github.com/James-Thorson-NOAA/phylosem/issues
NeedsCompilation: yes
Packaged: 2024-04-02 20:47:55 UTC; James.Thorson
Author: James Thorson [aut, cre] (<https://orcid.org/0000-0001-7415-1010>),
  Wouter van der Bijl [ctb] (<https://orcid.org/0000-0002-7366-1868>)
Maintainer: James Thorson <James.Thorson@noaa.gov>
Repository: CRAN
Date/Publication: 2024-04-02 21:15:03 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-02 17:15:14 UTC; unix
Archs: phylosem.so.dSYM
