# Dereplicate and Cherry-Pick Mass Spectrometry Spectra

## Documentation for package ‘maldipickr’ version 1.3.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

check_spectra | Evaluate the spectra regularities
delineate_with_identification | Delineate clusters from taxonomic identifications
delineate_with_similarity | Delineate clusters from a similarity matrix
gather_spectra_stats | Aggregate spectra quality-check statistics
get_spectra_names | Extract spectra names and check for uniqueness
import_biotyper_spectra | Importing spectra from the Bruker MALDI Biotyper device
import_spede_clusters | Import clusters results generated by SPeDE
is_well_on_edge | Identify the wells on the plate's edge
merge_processed_spectra | Merge multiple processed spectra and peaks
pick_spectra | Cherry-pick Bruker MALDI Biotyper spectra
process_spectra | Process Bruker MALDI Biotyper spectra _à la_ Strejcek et al. (2018)
read_biotyper_report | Importing Bruker MALDI Biotyper CSV report
read_many_biotyper_reports | Importing a list of Bruker MALDI Biotyper CSV reports
remove_spectra | Remove (raw or processed) spectra
set_reference_spectra | Set a reference spectrum for each cluster