# Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating

## Documentation for package ‘BayLum’ version 0.3.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AgeC14_Computation | Bayesian analysis for C-14 age estimations of various samples
AgeS | Output of 'AgeS_Computation' function for the samples: "GDB5" and "GDB3"
AgeS_Computation | Bayesian analysis for OSL age estimation of various samples
Age_Computation | Bayesian analysis for the OSL age estimation of one sample
Age_OSLC14 | Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples
combine_DataFiles | Combine objects
Concat_DataFile | Combine objects
create_DataFile | Prepare input data for subsequent BayLum Analysis
create_FolderTemplates | Create Folder Templates
create_ThetaMatrix | Create Theta Matrix
DATA1 | DATA of sample named GDB3
DATA2 | DATA on sample named GDB5
DATA3 | DATA of sample named FER1
DATA_C14 | C14 cal age estiamte and its error
Generate_DataFile | Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED)
Generate_DataFile-deprecated | Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED)
Generate_DataFile_MG | Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED)
Generate_DataFile_MG-deprecated | Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED)
IntCal13 | Atmospheric North data for calibration of 14C age
IntCal20 | Atmospheric North data for calibration of 14C age
LT_RegenDose | Plots Lx/Tx as a function of the regenerative dose (DEPRECATED)
LT_RegenDose-deprecated | Plots Lx/Tx as a function of the regenerative dose (DEPRECATED)
Marine13 | Marine data for calibration of 14C age
Marine20 | Marine data for calibration of 14C age
MCMCsample | MCMC sample from the posterior distribution of the dataset GDB5
ModelC14 | Likelihood of C14 samples for JAGS models use in 'Age_OSLC14'
ModelOSL | Likelihood of OSL samples for JAGS models use in 'Age_OSLC14'
ModelPrior | Prior for JAGS models use in 'Age_OSLC14'
Model_Age | JAGS models use in 'Age_Computation'
Model_AgeC14 | JAGS models use in 'AgeC14_Computation'
Model_AgeS | JAGS models use in 'AgeS_Computation'
Model_Palaeodose | JAGS models use in 'Palaeodose_Computation'
Palaeodose_Computation | Bayesian analysis for the palaeodose estimation of various samples
plot_Ages | Create Age Plot
plot_MCMC | Plot MCMC trajectories and posterior distributions
plot_RegDosePoints | Plot Regeneration Dose Points
plot_Scatterplots | Display Scatter Plot Matrix of the Bayesian Age Results
ScatterSamples | Display Scatter Plot Matrix of the Bayesian Age Results
SCMatrix | Construct the Stratigraphic Constrain Matrix Interactively
SC_Ordered | Create Stratigraphically Ordered Sample Matrix
SHCal13 | Atmospheric South data for calibration of 14C age
SHCal20 | Atmospheric South data for calibration of 14C age
write_BayLumFiles | Write BayLum .csv-files
write_YAMLConfigFile | Write Auto Generated YAML BayLum Configuration File to the Disc